Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g33437.1 |
Family | GH28 |
Protein Properties | Length: 499 Molecular Weight: 52802.4 Isoelectric Point: 4.7051 |
Chromosome | Chromosome/Scaffold: 2 Start: 33551824 End: 33554552 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 126 | 450 | 0 |
WSAACAVQSGVLLVPSDGTFTIASTTFSGPCQPGLVFQVDGVLMPPDGPDCWPPSDNRRQWLVFSNLDGMTLRGAGTIEGNGEEWWNLPCKPHRGPNGST LHGPCDSPTLIRFFMSRNLVVEGLRVENSPEFHFRFDGCSDVLVDGLFISAPANSPNTDGIHVENTERVRIYNSKISNGDDCISIGTGSYDLDIQNISCG PGHGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLRIKTWQGGAGSVSGIAFDGVLMENVRNCIIIDQYYCLDKRCMNASTAVRVANVSYSNVRGSYDV RSAPIHFACSDAVPCTNVTMSEVEL |
Full Sequence |
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Protein Sequence Length: 499 Download |
MRAASSRPSL MVLTLVLAAL CVVVVDGRNH IHKQKPHGHG GVGGRHNKAS GANGATVVSS 60 PAVPPEDADE PPPLLVPPPP IGTGIVPSDP ATPTQPEQQP CVFDVRAFGA AGESTADDTD 120 AFRAAWSAAC AVQSGVLLVP SDGTFTIAST TFSGPCQPGL VFQVDGVLMP PDGPDCWPPS 180 DNRRQWLVFS NLDGMTLRGA GTIEGNGEEW WNLPCKPHRG PNGSTLHGPC DSPTLIRFFM 240 SRNLVVEGLR VENSPEFHFR FDGCSDVLVD GLFISAPANS PNTDGIHVEN TERVRIYNSK 300 ISNGDDCISI GTGSYDLDIQ NISCGPGHGI SIGSLGVHNS QACVANVTVR NAVIRNSDNG 360 LRIKTWQGGA GSVSGIAFDG VLMENVRNCI IIDQYYCLDK RCMNASTAVR VANVSYSNVR 420 GSYDVRSAPI HFACSDAVPC TNVTMSEVEL LPFSGELVDD PFCWSAYGVQ QTPTIPPISC 480 LQDGLPESLL DDLDLKCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-73 | 103 | 482 | 388 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-77 | 103 | 456 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-89 | 136 | 450 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-93 | 83 | 450 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-118 | 102 | 483 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS98503.1 | 0 | 21 | 497 | 25 | 503 | unknown protein [Oryza sativa Japonica Group] |
RefSeq | NP_001055086.1 | 0 | 21 | 497 | 25 | 484 | Os05g0279900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002263668.1 | 0 | 93 | 497 | 73 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 87 | 488 | 76 | 473 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 25 | 491 | 24 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-24 | 184 | 450 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-24 | 184 | 450 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-24 | 184 | 450 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-24 | 184 | 450 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-24 | 184 | 450 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |