| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi2g43750.1 |
| Family | GH28 |
| Protein Properties | Length: 449 Molecular Weight: 47558.6 Isoelectric Point: 7.0703 |
| Chromosome | Chromosome/Scaffold: 2 Start: 44249723 End: 44252649 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 420 | 0 |
| APGGGLLYVPPGVWLTGPFNLTSHMTLFLSRGAVIRATQDTSSWPLIDPLPSYGRGREMPGKRYKSLIHGNGLQDVFITGANGTIDGQGSVWWDMWKKGT LPFTRPHLLELMDSSDVIVSNLVFRDSPFWNIHPVYCSNVVIRNLTILAPHDSPNTDGIDPDSSSNVCIEDCYISTGDDLVAIKSGWDEYGIAYGRPSSD ITVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFSSGFGVHIKTNSGRGGFIRNVTVSDVTLDNVRYGLRIAGDVGDHPDEHYNHNALPKVDSLTIKN VQGQNIKEAGSIKGIASSAFSRICLSNIKLHGSVPVRPWKCESV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MAYMAGRWRC LLAVAVAAVL SAAGGAGAQE TCSGAVPAPP KRGEWVSVAS FGGAGDGRTL 60 NTAAFAAAVA SIERRRAPGG GLLYVPPGVW LTGPFNLTSH MTLFLSRGAV IRATQDTSSW 120 PLIDPLPSYG RGREMPGKRY KSLIHGNGLQ DVFITGANGT IDGQGSVWWD MWKKGTLPFT 180 RPHLLELMDS SDVIVSNLVF RDSPFWNIHP VYCSNVVIRN LTILAPHDSP NTDGIDPDSS 240 SNVCIEDCYI STGDDLVAIK SGWDEYGIAY GRPSSDITVR RITGSSPFAG FAVGSETSGG 300 VENVLAEHLN FFSSGFGVHI KTNSGRGGFI RNVTVSDVTL DNVRYGLRIA GDVGDHPDEH 360 YNHNALPKVD SLTIKNVQGQ NIKEAGSIKG IASSAFSRIC LSNIKLHGSV PVRPWKCESV 420 SGGALDLQPS PCTELTSTSG TSFCTNSL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-21 | 46 | 384 | 353 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 1.0e-22 | 158 | 344 | 191 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-30 | 157 | 437 | 293 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-36 | 154 | 424 | 279 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-49 | 46 | 372 | 359 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY74990.1 | 0 | 30 | 448 | 26 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
| GenBank | EAY99223.1 | 0 | 29 | 446 | 34 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| RefSeq | NP_001056466.1 | 0 | 29 | 446 | 34 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141464.1 | 0 | 28 | 448 | 26 | 446 | hypothetical protein LOC100273574 [Zea mays] |
| RefSeq | XP_002455965.1 | 0 | 30 | 448 | 29 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 29 | 409 | 11 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 29 | 409 | 11 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 29 | 409 | 11 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 29 | 409 | 11 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-20 | 89 | 406 | 51 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
