Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g44750.1 |
Family | GH28 |
Protein Properties | Length: 545 Molecular Weight: 58411.2 Isoelectric Point: 8.403 |
Chromosome | Chromosome/Scaffold: 2 Start: 45118618 End: 45123092 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 169 | 496 | 0 |
AAACKQGSSTVLVPSELEFLVGPISFSGPYCKPNILFQLEGTILAPTNAKAWGSGLLQWLEFTKLNGLSIQGSGVINGRGQQWWTYSDPNDDEDDDTQYN QELERMPQVKPTALRFYGSFNVVVAGITIVNSSQCHLKFDNCQGVLVHDLTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCISIQTGCSNIYIHNV NCGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMTGVRIKTWQGGIGLVQDVRFSNIQVSEVQTPIMIDQFYCDKRTCTNQTSAVAVSGVQYENIRGT FTIKPVHFACSDSSPCSGITLTGVQLRP |
Full Sequence |
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Protein Sequence Length: 545 Download |
MKLRVKGFGL LLLLVLLALC STIDVCDARR GQHWRPRSSP GSSLFKRKGK PKKGSSHRQH 60 GVNRPSPKQP VTPPAGPGVG KGYQTPYQPT PSPNPSPISP VSPSPKPSPA NGNAHSSPKP 120 PSPSCGKGNQ PPAPPPVAAS QGAVFNVVDF GAKGDGVSDD TKAFQAAWAA ACKQGSSTVL 180 VPSELEFLVG PISFSGPYCK PNILFQLEGT ILAPTNAKAW GSGLLQWLEF TKLNGLSIQG 240 SGVINGRGQQ WWTYSDPNDD EDDDTQYNQE LERMPQVKPT ALRFYGSFNV VVAGITIVNS 300 SQCHLKFDNC QGVLVHDLTI SSPENSLNTD GIHLQNSKDV SIHHTNLACG DDCISIQTGC 360 SNIYIHNVNC GPGHGISIGG LGRDNTKACV SNVTVRDVNM FRTMTGVRIK TWQGGIGLVQ 420 DVRFSNIQVS EVQTPIMIDQ FYCDKRTCTN QTSAVAVSGV QYENIRGTFT IKPVHFACSD 480 SSPCSGITLT GVQLRPVQIP HYHLNNPFCW QAFGELYTPT IPPVACLQIG KPAGNNLQSY 540 NDIC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-65 | 142 | 494 | 358 | + polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-66 | 145 | 495 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-70 | 146 | 495 | 354 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-75 | 172 | 494 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-88 | 144 | 527 | 392 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35722.1 | 0 | 1 | 544 | 1 | 541 | unknown [Zea mays] |
RefSeq | NP_001043666.1 | 0 | 20 | 544 | 20 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148771.1 | 0 | 1 | 544 | 1 | 541 | polygalacturonase [Zea mays] |
RefSeq | NP_001150912.1 | 0 | 20 | 544 | 20 | 536 | polygalacturonase [Zea mays] |
RefSeq | XP_002456022.1 | 0 | 1 | 544 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-26 | 172 | 446 | 36 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 7e-17 | 243 | 494 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-17 | 243 | 494 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-17 | 243 | 494 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-17 | 243 | 494 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |