Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g44750.2 |
Family | GH28 |
Protein Properties | Length: 544 Molecular Weight: 58283 Isoelectric Point: 8.403 |
Chromosome | Chromosome/Scaffold: 2 Start: 45118618 End: 45123092 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 169 | 495 | 0 |
AAACKQGSSTVLVPSELEFLVGPISFSGPYCKPNILFQLEGTILAPTNAKAWGSGLLQWLEFTKLNGLSIQGSGVINGRGQQWWTYSDPNDDEDDDTYNQ ELERMPQVKPTALRFYGSFNVVVAGITIVNSSQCHLKFDNCQGVLVHDLTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCISIQTGCSNIYIHNVN CGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMTGVRIKTWQGGIGLVQDVRFSNIQVSEVQTPIMIDQFYCDKRTCTNQTSAVAVSGVQYENIRGTF TIKPVHFACSDSSPCSGITLTGVQLRP |
Full Sequence |
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Protein Sequence Length: 544 Download |
MKLRVKGFGL LLLLVLLALC STIDVCDARR GQHWRPRSSP GSSLFKRKGK PKKGSSHRQH 60 GVNRPSPKQP VTPPAGPGVG KGYQTPYQPT PSPNPSPISP VSPSPKPSPA NGNAHSSPKP 120 PSPSCGKGNQ PPAPPPVAAS QGAVFNVVDF GAKGDGVSDD TKAFQAAWAA ACKQGSSTVL 180 VPSELEFLVG PISFSGPYCK PNILFQLEGT ILAPTNAKAW GSGLLQWLEF TKLNGLSIQG 240 SGVINGRGQQ WWTYSDPNDD EDDDTYNQEL ERMPQVKPTA LRFYGSFNVV VAGITIVNSS 300 QCHLKFDNCQ GVLVHDLTIS SPENSLNTDG IHLQNSKDVS IHHTNLACGD DCISIQTGCS 360 NIYIHNVNCG PGHGISIGGL GRDNTKACVS NVTVRDVNMF RTMTGVRIKT WQGGIGLVQD 420 VRFSNIQVSE VQTPIMIDQF YCDKRTCTNQ TSAVAVSGVQ YENIRGTFTI KPVHFACSDS 480 SPCSGITLTG VQLRPVQIPH YHLNNPFCWQ AFGELYTPTI PPVACLQIGK PAGNNLQSYN 540 DIC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-65 | 145 | 494 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 6.0e-66 | 142 | 493 | 357 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-71 | 146 | 494 | 353 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-75 | 172 | 493 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-89 | 144 | 526 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35722.1 | 0 | 1 | 543 | 1 | 541 | unknown [Zea mays] |
RefSeq | NP_001043666.1 | 0 | 20 | 543 | 20 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148771.1 | 0 | 1 | 543 | 1 | 541 | polygalacturonase [Zea mays] |
RefSeq | NP_001150912.1 | 0 | 20 | 543 | 20 | 536 | polygalacturonase [Zea mays] |
RefSeq | XP_002456022.1 | 0 | 1 | 543 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-26 | 172 | 445 | 36 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-17 | 134 | 493 | 8 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 6e-17 | 243 | 493 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-17 | 243 | 493 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-17 | 243 | 493 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |