Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g46400.1 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 43498.7 Isoelectric Point: 9.392 |
Chromosome | Chromosome/Scaffold: 2 Start: 46846282 End: 46848080 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 381 | 0 |
AAACSSSHPGILLIPKGNKYLTKHVTFSGPCKSNIKLMIEGTLVAPQKRSYWIEQTIRHWILFKAVRGLTVTGGGTIDGNGKIWWQNSCKVNAELPCRQS PAALTFYSCTNLKVNNLELLNSQQIHMSVECCSDVRISRLSITAPSTSPNTDGIHIAHSKDVKVRDCAIKTGDDCMSIEDGTKNLHVKNIVCGPGHGISI GSLGDRNSEAEVANITIDGVRLHGTTNGARIKTWQGGRGYAKNIVFQNIIMDNVWNPIIINQNYCDSATPCKKQQSAVEVSNVLFKNIRGTSASREAIKL NCSPTVPCHGIALHNVRLTLKRGSGDAKSTCHNAQ |
Full Sequence |
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Protein Sequence Length: 399 Download |
MEVIPLTNGV DHRGRFLASN NVFNVLRYGA HGDGRHDDTK ALEKTWAAAC SSSHPGILLI 60 PKGNKYLTKH VTFSGPCKSN IKLMIEGTLV APQKRSYWIE QTIRHWILFK AVRGLTVTGG 120 GTIDGNGKIW WQNSCKVNAE LPCRQSPAAL TFYSCTNLKV NNLELLNSQQ IHMSVECCSD 180 VRISRLSITA PSTSPNTDGI HIAHSKDVKV RDCAIKTGDD CMSIEDGTKN LHVKNIVCGP 240 GHGISIGSLG DRNSEAEVAN ITIDGVRLHG TTNGARIKTW QGGRGYAKNI VFQNIIMDNV 300 WNPIIINQNY CDSATPCKKQ QSAVEVSNVL FKNIRGTSAS REAIKLNCSP TVPCHGIALH 360 NVRLTLKRGS GDAKSTCHNA QWRKLGTVMP QPCNLNNN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-100 | 17 | 398 | 384 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-111 | 50 | 380 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-112 | 18 | 393 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-140 | 19 | 393 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-141 | 17 | 394 | 380 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 6 | 389 | 34 | 419 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57275.1 | 0 | 12 | 397 | 20 | 405 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 1 | 393 | 28 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ39077.1 | 0 | 6 | 389 | 34 | 419 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 1 | 393 | 28 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-27 | 117 | 365 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-20 | 24 | 372 | 22 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 1e-17 | 115 | 341 | 71 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_B | 3e-16 | 115 | 348 | 74 | 306 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_A | 3e-16 | 115 | 348 | 74 | 306 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 252 | 103 | 354 | 0 |
EE091344 | 247 | 122 | 368 | 0 |
GO793085 | 201 | 197 | 397 | 0 |
CA139845 | 239 | 138 | 376 | 0 |
BJ255300 | 204 | 195 | 397 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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