Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g49500.1 |
Family | CE8 |
Protein Properties | Length: 390 Molecular Weight: 42455.1 Isoelectric Point: 8.7049 |
Chromosome | Chromosome/Scaffold: 2 Start: 49568815 End: 49578283 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 91 | 383 | 0 |
VVDKNPSSGDFTSIQAAVDSLPPINLVRVVIKVNAGTYTEKVNISPMRAFITLEGAGADRTVVQWGDTADTPAGPRGRPLGTYGSASFAVNAQYFLARNI TFKNTSPVPKAGASGKQAVALRVSADNAAFVGCKFLGAQDTLYDHTGRHYYKDCYIEGSIDFIFGNALSLYEGCHVHAIARDYGALTAQNRQSMLEDTGF SFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDDIIIPRGWYNWGDPSRELTVFYGQYKCTGPGASYSGRVSWSRELTDEEAKPFISLSFIDG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MSAPRARLLA CIGIAVATAL AVVLPDGVAG HTRGVRPGEV AKNQPPFPEN ATRAEELERL 60 FLRWVRYVGG LQHTTFRHAP LARVFPSYSL VVDKNPSSGD FTSIQAAVDS LPPINLVRVV 120 IKVNAGTYTE KVNISPMRAF ITLEGAGADR TVVQWGDTAD TPAGPRGRPL GTYGSASFAV 180 NAQYFLARNI TFKNTSPVPK AGASGKQAVA LRVSADNAAF VGCKFLGAQD TLYDHTGRHY 240 YKDCYIEGSI DFIFGNALSL YEGCHVHAIA RDYGALTAQN RQSMLEDTGF SFVNCRVTGS 300 GALYLGRAWG TFSRVVFAYT YMDDIIIPRG WYNWGDPSRE LTVFYGQYKC TGPGASYSGR 360 VSWSRELTDE EAKPFISLSF IDGTEWVRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-114 | 99 | 388 | 290 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-115 | 90 | 388 | 307 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 6.0e-118 | 90 | 387 | 299 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-119 | 98 | 386 | 291 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 2 | 389 | 388 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26093.1 | 0 | 1 | 389 | 1 | 399 | unknown [Zea mays] |
GenBank | ACR36293.1 | 0 | 1 | 389 | 1 | 391 | unknown [Zea mays] |
GenBank | EEC79546.1 | 0 | 7 | 389 | 12 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 1 | 389 | 1 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458469.1 | 0 | 1 | 389 | 1 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 98 | 388 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4.06377e-44 | 98 | 388 | 12 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-32 | 88 | 375 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-18 | 87 | 375 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-18 | 87 | 375 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |