| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi2g54350.1 |
| Family | PL1 |
| Protein Properties | Length: 397 Molecular Weight: 43523.6 Isoelectric Point: 5.1493 |
| Chromosome | Chromosome/Scaffold: 2 Start: 53311902 End: 53313386 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 116 | 295 | 0 |
| IVFDVSGTIHLSSGLRVSSYKTIDGRGQRVTLSGKGLLLRECEHVILCNLEVEGGRGHDADAVQIKPRSRHVWVDRCGLRDFADGLLDVTCGSTDVTVSR CRFSAHDKAVLIGASSGHVQDRGIRVTIHHCFFDGTRQRQPRVRFGRVHLYNNYTRGWGIYAVCASVESQIVSQHNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 397 Download |
| MAPPQSDEQL GAEPAMEGLT IPPDQNDEPT MDGYTVPPHD HSVDQLIGNL PPMQDTTFIP 60 YAAVDSSLRA MAGQAEGFGR HAIGGLHGDV YHVTTLADDG PGSLRVGCRR QEPLWIVFDV 120 SGTIHLSSGL RVSSYKTIDG RGQRVTLSGK GLLLRECEHV ILCNLEVEGG RGHDADAVQI 180 KPRSRHVWVD RCGLRDFADG LLDVTCGSTD VTVSRCRFSA HDKAVLIGAS SGHVQDRGIR 240 VTIHHCFFDG TRQRQPRVRF GRVHLYNNYT RGWGIYAVCA SVESQIVSQH NIYEAGEKKK 300 AFMYMNEQAA DRDKSSSGSI RSEGDLFLNG AEDCNENDSE ENLWDFEVKN CYQSCSAQPA 360 SLALKELLEY CTGWQPVPLP EDIRFAENCA AATTDI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-36 | 117 | 291 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 4.0e-41 | 84 | 330 | 266 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 8.0e-61 | 119 | 296 | 190 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD73403.1 | 0 | 37 | 395 | 3 | 340 | putative pectate lyase [Oryza sativa Japonica Group] |
| EMBL | CBI32661.1 | 0 | 59 | 382 | 4 | 324 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY76417.1 | 0 | 96 | 395 | 1 | 305 | hypothetical protein OsI_04348 [Oryza sativa Indica Group] |
| RefSeq | XP_002277576.1 | 0 | 59 | 382 | 48 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002456600.1 | 0 | 44 | 387 | 7 | 356 | hypothetical protein SORBIDRAFT_03g039150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 4.99983e-42 | 65 | 350 | 15 | 331 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 4.99983e-42 | 65 | 350 | 15 | 331 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 1e-23 | 130 | 293 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 9e-22 | 83 | 293 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 3e-19 | 128 | 272 | 74 | 248 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY289690 | 309 | 23 | 331 | 0 |
| DY271752 | 304 | 23 | 326 | 0 |
| DY275282 | 334 | 59 | 386 | 0 |
| JG177860 | 305 | 76 | 380 | 0 |
| EL513630 | 281 | 52 | 332 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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