Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g57427.1 |
Family | GH28 |
Protein Properties | Length: 413 Molecular Weight: 43176.2 Isoelectric Point: 8.672 |
Chromosome | Chromosome/Scaffold: 2 Start: 55598911 End: 55600602 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 401 | 0 |
PATVHVPPGVFLLGRSTTFSGPCKARSIAFSIAGTLLAPAGYGWDSAGPGRWITFESVDRLTVSGGTLDARGASLWACKKQQQLLHPLLHCPSGASSLTI SNSKGVLVEGVRSVNSELFHVVVLQSHGVTLRRVAVEAPGDSPNTDGIHVHMSSHVSVYDANIRTGDDCVSIGPGNSHLWVERVACGPGHGISIGSLGKE QGMAVEAVQNVTVKTTWFTGTTNGLRIKTWGSSKRGFVSGVDFIDSTMTGVQNPIIIDQNYCPDKNGCGTHKSSSIKVSDVKYVGIRGWSATPVAVNFDC SKSNPCRGISLQDVMLTYNQSPMVGGAAKSSCRNAQGS |
Full Sequence |
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Protein Sequence Length: 413 Download |
MVVKAPLLSL LVNLHAALLF LPAPGSAQVY DVTRYGARPD GVTDSAVPFL RAWADACRSP 60 GLGPATVHVP PGVFLLGRST TFSGPCKARS IAFSIAGTLL APAGYGWDSA GPGRWITFES 120 VDRLTVSGGT LDARGASLWA CKKQQQLLHP LLHCPSGASS LTISNSKGVL VEGVRSVNSE 180 LFHVVVLQSH GVTLRRVAVE APGDSPNTDG IHVHMSSHVS VYDANIRTGD DCVSIGPGNS 240 HLWVERVACG PGHGISIGSL GKEQGMAVEA VQNVTVKTTW FTGTTNGLRI KTWGSSKRGF 300 VSGVDFIDST MTGVQNPIII DQNYCPDKNG CGTHKSSSIK VSDVKYVGIR GWSATPVAVN 360 FDCSKSNPCR GISLQDVMLT YNQSPMVGGA AKSSCRNAQG STLGLVVPPS CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-72 | 28 | 402 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-77 | 64 | 411 | 349 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-87 | 24 | 412 | 391 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-89 | 26 | 411 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-102 | 26 | 412 | 387 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR36955.1 | 0 | 121 | 412 | 1 | 285 | unknown [Zea mays] |
GenBank | EAZ14447.1 | 0 | 7 | 412 | 5 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
RefSeq | NP_001045053.1 | 0 | 7 | 412 | 5 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141204.1 | 0 | 1 | 412 | 1 | 401 | hypothetical protein LOC100273291 [Zea mays] |
RefSeq | XP_002456767.1 | 0 | 1 | 412 | 1 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-19 | 161 | 344 | 154 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.0000000000006 | 110 | 397 | 86 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.0000000000006 | 110 | 397 | 86 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.000000000001 | 170 | 324 | 116 | 270 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.000000000001 | 170 | 324 | 116 | 270 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |