Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g02850.1 |
Family | GH28 |
Protein Properties | Length: 510 Molecular Weight: 54590.2 Isoelectric Point: 4.7443 |
Chromosome | Chromosome/Scaffold: 3 Start: 1787511 End: 1790261 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 140 | 459 | 0 |
ACSLSNAVLVVPANRRYKVGTMRFMGPCKEKLVVLIQGAIVAPEEPEDWDPASPRLWLLFGGLVGARIQGGGIIDGSGSKWWANSCKIDKSKPCRGAPTA VTIDSSRSVRVRRLRIQNAQQMHLTVSRSHAVSVSGVIISAPRDSPNTDGIHVSESTAVTITSCRIGTGDDCISISNASFAIKMKGIVCDPGHGISIGSL GQGGSYAAVEGVTLDNARISNAQNGVRIKTWQGGTGYVRDVRFSNVLVEGVDHPIIIDQFYCDSRTPCQNQSTNVQVSDVMYRNITGTSTRAEAIKFACS ETVPCSDIVLSNIDLLREDG |
Full Sequence |
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Protein Sequence Length: 510 Download |
METGRRRGGM RAMLLLVLMV MAAAAERSSD VVGVVGAGGG EDEAAAVDED EERFLKPWKE 60 RAGDGDEEED HLMEWHDGDN DDDDEEEYEE LDGIMLGETT ARCRAGHSKC RNVVNVDSFG 120 AAGDGTADDT EAFRNAWKKA CSLSNAVLVV PANRRYKVGT MRFMGPCKEK LVVLIQGAIV 180 APEEPEDWDP ASPRLWLLFG GLVGARIQGG GIIDGSGSKW WANSCKIDKS KPCRGAPTAV 240 TIDSSRSVRV RRLRIQNAQQ MHLTVSRSHA VSVSGVIISA PRDSPNTDGI HVSESTAVTI 300 TSCRIGTGDD CISISNASFA IKMKGIVCDP GHGISIGSLG QGGSYAAVEG VTLDNARISN 360 AQNGVRIKTW QGGTGYVRDV RFSNVLVEGV DHPIIIDQFY CDSRTPCQNQ STNVQVSDVM 420 YRNITGTSTR AEAIKFACSE TVPCSDIVLS NIDLLREDGD ELHTVCNCVM GFDYGPVRPP 480 ADCLRNNVCG GGGGQKIGGE EPPPLHTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-55 | 112 | 454 | 347 | + Probable polygalacturonase At3g15720 | ||
PLN02155 | PLN02155 | 5.0e-58 | 108 | 484 | 388 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-76 | 142 | 454 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-84 | 114 | 454 | 344 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-110 | 104 | 487 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD07736.1 | 0 | 48 | 491 | 20 | 459 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EEC72414.1 | 0 | 49 | 491 | 21 | 459 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
RefSeq | NP_001045783.1 | 0 | 3 | 491 | 4 | 486 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002317091.1 | 0 | 113 | 484 | 33 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002453250.1 | 0 | 106 | 509 | 96 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-27 | 197 | 454 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-27 | 197 | 454 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-27 | 197 | 454 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-27 | 197 | 454 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-27 | 197 | 454 | 63 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |