Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g07120.1 |
Family | GH28 |
Protein Properties | Length: 419 Molecular Weight: 44227.6 Isoelectric Point: 8.6148 |
Chromosome | Chromosome/Scaffold: 3 Start: 5281694 End: 5283037 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 406 | 0 |
KNACAATGVQKIIIPPGNFLIGALALEGPCTSSIIIRLDGNLLGTGDLNAYKKNWIEVMHVDNFAINGHGTIDGQGPLVWQKNQCNKNYNCKILPNSLVL DYVTNASIRGVTLKNAKFFHMNLFNCKNVVVDKVNITAPGDSPNTDGIHMGDSDNITITNTNIGVGDDCISIGPGTQRVRVHGSRCGPGHGISVGSLGRY KDEKNVEDIQVTNCTIKGATNGLRIKSYEDSKSVLKASRFVYDQIVMDNVSFPIVIDQKYCPNNICNKNGQSTVTIQDIVFKNIVGTSATPEAVTLNCPN NLPCQGVQLVNVNLKYVGARNNKTMAVCHNAVG |
Full Sequence |
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Protein Sequence Length: 419 Download |
MARATAAGRR SWAAARCIVA LYCAAALTTA PAAATYAAAG GPPSVPAGPL DIVLLGAKGD 60 GKTDATEAVQ KAWKNACAAT GVQKIIIPPG NFLIGALALE GPCTSSIIIR LDGNLLGTGD 120 LNAYKKNWIE VMHVDNFAIN GHGTIDGQGP LVWQKNQCNK NYNCKILPNS LVLDYVTNAS 180 IRGVTLKNAK FFHMNLFNCK NVVVDKVNIT APGDSPNTDG IHMGDSDNIT ITNTNIGVGD 240 DCISIGPGTQ RVRVHGSRCG PGHGISVGSL GRYKDEKNVE DIQVTNCTIK GATNGLRIKS 300 YEDSKSVLKA SRFVYDQIVM DNVSFPIVID QKYCPNNICN KNGQSTVTIQ DIVFKNIVGT 360 SATPEAVTLN CPNNLPCQGV QLVNVNLKYV GARNNKTMAV CHNAVGKSTN VAKELACL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-70 | 56 | 418 | 369 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-74 | 50 | 418 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-77 | 56 | 388 | 339 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-96 | 77 | 404 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-111 | 56 | 407 | 352 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD25264.1 | 0 | 44 | 418 | 49 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
GenBank | EEC72677.1 | 0 | 98 | 418 | 65 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
RefSeq | NP_001046194.1 | 0 | 44 | 418 | 76 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141808.1 | 0 | 40 | 418 | 41 | 418 | hypothetical protein LOC100273946 [Zea mays] |
RefSeq | XP_002451722.1 | 0 | 41 | 418 | 86 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-25 | 44 | 387 | 7 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 145 | 360 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 145 | 360 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 145 | 360 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 145 | 360 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |