Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g09590.1 |
Family | GH28 |
Protein Properties | Length: 109 Molecular Weight: 12337 Isoelectric Point: 10.4268 |
Chromosome | Chromosome/Scaffold: 3 Start: 7757332 End: 7758576 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 28 | 108 | 1.7e-22 |
ELPGARYASFIHGNGLRDVVITGDKGVIDGQGDVWWNMWRRRTLQHTRPNLVEFVHSSGIHISNVVLKNSLFWNIHPVYSE |
Full Sequence |
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Protein Sequence Length: 109 Download |
RGAVLKATQD TRSWLLMEPL PSYGRGRELP GARYASFIHG NGLRDVVITG DKGVIDGQGD 60 VWWNMWRRRT LQHTRPNLVE FVHSSGIHIS NVVLKNSLFW NIHPVYSE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 0.001 | 37 | 97 | 62 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 0.0004 | 21 | 108 | 96 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN33336.1 | 0 | 1 | 108 | 111 | 218 | unknown [Zea mays] |
GenBank | ACN36471.1 | 0 | 1 | 108 | 7 | 114 | unknown [Zea mays] |
GenBank | EAY85246.1 | 0 | 1 | 108 | 104 | 211 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
RefSeq | NP_001046468.1 | 0 | 1 | 108 | 104 | 211 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451891.1 | 0 | 1 | 108 | 106 | 213 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CK057255 | 108 | 1 | 108 | 0 |
CB650056 | 108 | 1 | 108 | 0 |
CB647764 | 108 | 1 | 108 | 0 |
CO519600 | 108 | 1 | 108 | 0 |
EE185741 | 108 | 1 | 108 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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