Basic Information | |
---|---|
Species | Brachypodium distachyon |
Cazyme ID | Bradi3g13260.1 |
Family | GH28 |
Protein Properties | Length: 486 Molecular Weight: 52068.9 Isoelectric Point: 6.74 |
Chromosome | Chromosome/Scaffold: 3 Start: 11766063 End: 11769754 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 109 | 459 | 0 |
AAGGGAMLEVPPGRWLTGSFNLTSRFTLFLHHGAVILGSQDPEEWPLIAPLPSYGRGRERLGPRHISLIHGENLDDVVITGSNGTIDGQGRMWWELWWNR TLNHTRGHLIELVNSTNVMISNVTLRNSPFWTVHPVYCRNVVIKDLTILAPLNAPNTDGIDPDSSSDVCIEDCYIESGDDLVAIKSGWDQYGISVNKPST NIIIQRVSGTTPTCSGVGIGSEMSGGVSGVLIRDLHVWNSASAVRIKTDVGRGGFVTNVTVANVTMERVKVPIRFSRGSDDHSDDKYDRTALPTISDVRI VDIVGVDVQRAPILEAVHGAVYEGICFRNVSLRLREEVRRRHAGWQCESVY |
Full Sequence |
---|
Protein Sequence Length: 486 Download |
MAHAAPVCAR LPPWRVLLLL LALLAFSCFA LTRFPAAGAP LAALIAASSP AAGGSGRESC 60 AGFYRGEGAG GRRAASASVE EFGAVGDGVT SNTAAFRRAV AALEQRAAAA GGGAMLEVPP 120 GRWLTGSFNL TSRFTLFLHH GAVILGSQDP EEWPLIAPLP SYGRGRERLG PRHISLIHGE 180 NLDDVVITGS NGTIDGQGRM WWELWWNRTL NHTRGHLIEL VNSTNVMISN VTLRNSPFWT 240 VHPVYCRNVV IKDLTILAPL NAPNTDGIDP DSSSDVCIED CYIESGDDLV AIKSGWDQYG 300 ISVNKPSTNI IIQRVSGTTP TCSGVGIGSE MSGGVSGVLI RDLHVWNSAS AVRIKTDVGR 360 GGFVTNVTVA NVTMERVKVP IRFSRGSDDH SDDKYDRTAL PTISDVRIVD IVGVDVQRAP 420 ILEAVHGAVY EGICFRNVSL RLREEVRRRH AGWQCESVYG EAHGVFPEAC EELRHNGSSS 480 WCGLS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-19 | 78 | 381 | 319 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-21 | 79 | 381 | 319 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-24 | 79 | 399 | 343 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-35 | 177 | 381 | 213 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-54 | 78 | 391 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ05322.1 | 0 | 53 | 485 | 57 | 482 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
GenBank | EAZ41253.1 | 0 | 53 | 485 | 57 | 482 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
RefSeq | NP_001060796.1 | 0 | 53 | 485 | 57 | 482 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148255.1 | 0 | 19 | 484 | 32 | 492 | polygalacturonase [Zea mays] |
RefSeq | XP_002443718.1 | 0 | 17 | 484 | 31 | 496 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-38 | 81 | 411 | 32 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-38 | 81 | 411 | 32 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-38 | 81 | 411 | 32 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-38 | 81 | 411 | 32 | 381 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-17 | 192 | 458 | 117 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |