Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g20537.1 |
Family | GH28 |
Protein Properties | Length: 417 Molecular Weight: 44783.5 Isoelectric Point: 8.6656 |
Chromosome | Chromosome/Scaffold: 3 Start: 19555617 End: 19557187 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 405 | 0 |
AWKAACGAAGTVTLVIPAGTYYIGPTQFHGPCKCAAITFMLQGTLKAATDLKRFGNDWIEFGWVNHLTVAGQNGIIDGQGAASWPFNKCPIRKDCKVLPT SVLFVNNQNTVVKDIQSVNSKFFHIALLNTNNIRMSNLRINAPGNSPNTDGIHIERCNGVFIADTKISTGDDCISIGQGNDNVDISRVHCGPGHGMSVGS LGRYVGEGDVTRIHVRDMTFDGTMNGVRIKTWENSPTKSLAAHMVFENMVMKDVQNPIIIDQKYCPYYNCEHKYVSGVTIKDIQFKNIKGTASLPVAVML RCGVPCQGVVLQDVDLKFKGQGGASSKCENAKAK |
Full Sequence |
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Protein Sequence Length: 417 Download |
MEARPRLLLV VVVAAAIVSL CGAVAAENVT VAQLVPMSSY YHGAPAPTTF NAKNYGAKGN 60 GVNDDTKPLM AAWKAACGAA GTVTLVIPAG TYYIGPTQFH GPCKCAAITF MLQGTLKAAT 120 DLKRFGNDWI EFGWVNHLTV AGQNGIIDGQ GAASWPFNKC PIRKDCKVLP TSVLFVNNQN 180 TVVKDIQSVN SKFFHIALLN TNNIRMSNLR INAPGNSPNT DGIHIERCNG VFIADTKIST 240 GDDCISIGQG NDNVDISRVH CGPGHGMSVG SLGRYVGEGD VTRIHVRDMT FDGTMNGVRI 300 KTWENSPTKS LAAHMVFENM VMKDVQNPII IDQKYCPYYN CEHKYVSGVT IKDIQFKNIK 360 GTASLPVAVM LRCGVPCQGV VLQDVDLKFK GQGGASSKCE NAKAKYIGYQ HPKPCP* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-79 | 54 | 415 | 378 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-83 | 46 | 415 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-84 | 46 | 413 | 376 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 83 | 403 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 29 | 416 | 396 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ62998.1 | 0 | 50 | 415 | 29 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
GenBank | EEE68484.1 | 0 | 1 | 416 | 1 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
RefSeq | NP_001061556.1 | 0 | 1 | 416 | 1 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437842.1 | 0 | 49 | 415 | 30 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
RefSeq | XP_002444237.1 | 0 | 48 | 416 | 24 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-16 | 145 | 354 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000006 | 109 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000006 | 109 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000006 | 109 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000006 | 109 | 401 | 44 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |