| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi3g24410.1 |
| Family | GH10 |
| Protein Properties | Length: 603 Molecular Weight: 66753 Isoelectric Point: 7.7279 |
| Chromosome | Chromosome/Scaffold: 3 Start: 23885101 End: 23887819 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 256 | 517 | 0 |
| AGFPFGNTMTKEILNIPAYEKWFTSRFTVATMENEMKWYSTEWNQNQEDYRIPDAMLKLAQKYGIKVRGHNVFWDDQNSQIRWVRPMNVNQLKAAMQKRL KSVVSRYVGKVIHWDVVNENLHFNFFETKLGPNASPQIYQQVGQIDHNAVLFMNEFNTLEQPMDPNGTPTKYVAKMKLIRGYPGNGGLKLGVGLESHFST PNIPYVRGALDTLAQLKLPMWMTEVDVVKGPNQVKYLEQVLREGYGHPGVQGIIMWAAWHAN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 603 Download |
| MRDFIGKPVL CLLWISLLQG CMVQSVEYDH TASIEANLNV KRICNDLCLS DPMGPLYKSG 60 IIQNGDFNNG LMGWSTYRNI KAGVRRSSQS GNNFAVVHGA GSSQLSGTGT GTNAAALSHS 120 VYQKVQMQGD THYSLSAWLR VSAGTAHVRA MVKAPNGENI TAGAIDVQSG CWTMLKGGMT 180 AHAYHSGPGE IFFESDDHVD IWVDSVSLQP FSFEEWDAHA LQSANKARRS TVKVVVRGAD 240 GKPMAHANMS IELLRAGFPF GNTMTKEILN IPAYEKWFTS RFTVATMENE MKWYSTEWNQ 300 NQEDYRIPDA MLKLAQKYGI KVRGHNVFWD DQNSQIRWVR PMNVNQLKAA MQKRLKSVVS 360 RYVGKVIHWD VVNENLHFNF FETKLGPNAS PQIYQQVGQI DHNAVLFMNE FNTLEQPMDP 420 NGTPTKYVAK MKLIRGYPGN GGLKLGVGLE SHFSTPNIPY VRGALDTLAQ LKLPMWMTEV 480 DVVKGPNQVK YLEQVLREGY GHPGVQGIIM WAAWHANGCY VMCLTDNSFK NLPVGALVDK 540 LIAEWKTHKT AATTDANGVV DLDLVHGDYS LAVNHPSLQS AAIHTMTVDA ESLSEHTISL 600 KA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 6.0e-25 | 239 | 486 | 261 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-39 | 252 | 511 | 282 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-69 | 291 | 535 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM08566.1 | 0 | 53 | 601 | 1 | 540 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
| GenBank | EEC66792.1 | 0 | 9 | 601 | 6 | 577 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
| GenBank | EEE50812.1 | 0 | 53 | 601 | 1 | 532 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064415.1 | 0 | 9 | 601 | 6 | 577 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002461545.1 | 0 | 48 | 602 | 11 | 567 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-24 | 260 | 534 | 15 | 294 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1ta3_B | 1e-19 | 260 | 511 | 17 | 268 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1tux_A | 9e-19 | 282 | 495 | 40 | 252 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 2e-17 | 272 | 512 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 2e-17 | 272 | 512 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
