Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g27926.1 |
Family | PL1 |
Protein Properties | Length: 480 Molecular Weight: 51017.4 Isoelectric Point: 6.7083 |
Chromosome | Chromosome/Scaffold: 3 Start: 29162281 End: 29166331 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 128 | 334 | 0 |
IQEGPLWIVFAADMTIRLNEELLVNSYKTIDGRGANVHVGAGGACITLQYVSNVIIHNIHVHDCVPAGNANVRSSPTHSGWRTRSDGDGISLYSARDVWV DHCALSRCADGLVDAIMGSTAITVSNSYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGVQLVQRMPRCRRGYFHIVNNDYTAWEMYAIGGSASPTINS QGNRYIA |
Full Sequence |
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Protein Sequence Length: 480 Download |
MAGAPKSTRI IFLLPLLLLG ATASSHPLLN ASLPEPAAVV ADFHSKVATS RRRMQESGGG 60 CMTGNPIDDC WRCAGTDWRQ DRQRLADCGI GFGRNALGGK GGPLYVVTDS SDRDPVNPSP 120 GTLRHAVIQE GPLWIVFAAD MTIRLNEELL VNSYKTIDGR GANVHVGAGG ACITLQYVSN 180 VIIHNIHVHD CVPAGNANVR SSPTHSGWRT RSDGDGISLY SARDVWVDHC ALSRCADGLV 240 DAIMGSTAIT VSNSYFSHHN EVMLLGHSDD YLPDSGMQVT IAFNHFGVQL VQRMPRCRRG 300 YFHIVNNDYT AWEMYAIGGS ASPTINSQGN RYIAPANPNA KEVTKRVDTA EGQWNGWNWR 360 TEGDMMVNGA FFVPSGEGME DIYQKASSID PKSSALVDQL TIGAGVLGGP RDNGEAAAYA 420 GVNYAGVSTG GGASGGRGNG YGVLGMVYAN GGDWISCRSH LIPSLASLLV FALVCLHPL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 98 | 330 | 251 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-68 | 147 | 332 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-76 | 140 | 335 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP54096.1 | 0 | 29 | 411 | 30 | 419 | pectate lyase 12 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF26675.2 | 0 | 29 | 411 | 30 | 419 | Os10g0457200 [Oryza sativa Japonica Group] |
GenBank | EEC67092.1 | 0 | 29 | 479 | 30 | 491 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
RefSeq | NP_001147972.1 | 0 | 1 | 479 | 1 | 483 | pectate lyase 12 [Zea mays] |
RefSeq | XP_002464529.1 | 0 | 1 | 479 | 1 | 482 | hypothetical protein SORBIDRAFT_01g020180 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 65 | 407 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 65 | 407 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 96 | 333 | 21 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000006 | 149 | 332 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000005 | 156 | 344 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |