Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g32610.1 |
Family | GT47 |
Protein Properties | Length: 415 Molecular Weight: 47162.7 Isoelectric Point: 9.9512 |
Chromosome | Chromosome/Scaffold: 3 Start: 34990280 End: 34992658 |
Description | FRA8 homolog |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 58 | 354 | 0 |
AGVRIYVYDLPPRFNRAWVSADARCGRHLFAAEVAVHEALLRRHLRARPEEADLFLVPVYVSCNFSTPTGLPSLKHARGLLAEAVELVRRDMPYWNRSAG TDHVFVASHDFGACFHAMEDVAIAGGIPEFLKRSILLQTFGVQGRHTCQEVEHVVIPPHVLPEVARELPEPEKSHRDIFAFFRGKMEVHPKNMSGRFYGK KVRTKLLQLYGHNRKFYLKRKQHDGYRLEMARSLFCLCPLGWAPWSPRLVESVLLGCIPVIIADNIRLPFPGVLRWPDISLQVAERDIANLEAMLDH |
Full Sequence |
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Protein Sequence Length: 415 Download |
MRDPKPKPAG AQQQPNHIDK SRKHCSWLWL LWASLSAYLF IPALRHSSSD QPPRPAGAGV 60 RIYVYDLPPR FNRAWVSADA RCGRHLFAAE VAVHEALLRR HLRARPEEAD LFLVPVYVSC 120 NFSTPTGLPS LKHARGLLAE AVELVRRDMP YWNRSAGTDH VFVASHDFGA CFHAMEDVAI 180 AGGIPEFLKR SILLQTFGVQ GRHTCQEVEH VVIPPHVLPE VARELPEPEK SHRDIFAFFR 240 GKMEVHPKNM SGRFYGKKVR TKLLQLYGHN RKFYLKRKQH DGYRLEMARS LFCLCPLGWA 300 PWSPRLVESV LLGCIPVIIA DNIRLPFPGV LRWPDISLQV AERDIANLEA MLDHVASTNL 360 TTIQGNLWDP VKRKALVFNQ PMEEGDATWQ VLKELEAKLG HLRQKGRISP RLDR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-56 | 56 | 352 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN62780.1 | 0 | 49 | 399 | 66 | 436 | Unknown protein [Oryza sativa Japonica Group] |
GenBank | ACN31903.1 | 0 | 1 | 405 | 1 | 420 | unknown [Zea mays] |
RefSeq | NP_001048697.1 | 0 | 49 | 399 | 66 | 414 | Os03g0107900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_197685.2 | 0 | 29 | 399 | 49 | 451 | F8H (FRA8 HOMOLOG); catalytic [Arabidopsis thaliana] |
RefSeq | XP_002468679.1 | 0 | 1 | 405 | 1 | 421 | hypothetical protein SORBIDRAFT_01g050110 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797103 | 358 | 59 | 413 | 0 |
DV032944 | 244 | 162 | 405 | 0 |
DY287013 | 306 | 110 | 413 | 0 |
DT744773 | 276 | 127 | 399 | 0 |
CK261693 | 314 | 85 | 395 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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