| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi3g35230.1 |
| Family | AA7 |
| Protein Properties | Length: 369 Molecular Weight: 39901.4 Isoelectric Point: 9.718 |
| Chromosome | Chromosome/Scaffold: 3 Start: 37539518 End: 37540699 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 2 | 120 | 1.10002e-41 |
| GVGGHFSGGGMGLMMRKHGLSVDNVVDAKLVNRDGAVLGRASMGEDLFWAVRGGGGSFGVVLSWKVRLVRVPPKVAVFNVARMVGQNATGILARWQDVAP ALPGELTVRVLVQGRQRAL | |||
| Full Sequence |
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| Protein Sequence Length: 369 Download |
| MGVGGHFSGG GMGLMMRKHG LSVDNVVDAK LVNRDGAVLG RASMGEDLFW AVRGGGGSFG 60 VVLSWKVRLV RVPPKVAVFN VARMVGQNAT GILARWQDVA PALPGELTVR VLVQGRQRAL 120 FQALYLGTCK SLVATMGREF PELGMTGADC RPMTWLQSVG FAISGNADTP VEALLNRSTG 180 ALSSSSFVKN KSDYVRRAIP KAVWEDIFSR WFNKNIGSGG GRDGDGLMIL GPHGGFMSTV 240 PAAATPYPHR DGVLYNIQYI VSWRQQHAGD DGAAAMTWLG SLYDFMGQHV SKEPREAYVN 300 YRDLDIGENS ESVMGNANGV GGFDAGKAWG ERYFMGNYRR LAQVKAAVDP TDYFRNEQSI 360 PPLFQPRN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 2.0e-6 | 17 | 363 | 356 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 7.0e-16 | 297 | 361 | 65 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD53690.1 | 0 | 12 | 368 | 189 | 524 | putative CPRD2 [Oryza sativa Japonica Group] |
| GenBank | EAZ01289.1 | 0 | 14 | 367 | 190 | 526 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
| GenBank | EEC80786.1 | 0 | 12 | 368 | 189 | 524 | hypothetical protein OsI_23315 [Oryza sativa Indica Group] |
| RefSeq | NP_001057830.1 | 0 | 12 | 368 | 232 | 567 | Os06g0549300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438541.1 | 0 | 14 | 362 | 194 | 522 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 14 | 364 | 168 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 14 | 364 | 168 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 14 | 365 | 166 | 498 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 14 | 365 | 166 | 498 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 14 | 365 | 166 | 498 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CJ804217 | 266 | 98 | 363 | 0 |
| CJ832828 | 249 | 60 | 308 | 0 |
| CJ629557 | 288 | 21 | 307 | 0 |
| FE615800 | 253 | 58 | 310 | 0 |
| CJ520853 | 285 | 80 | 364 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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