Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g42120.1 |
Family | GH28 |
Protein Properties | Length: 439 Molecular Weight: 45188.7 Isoelectric Point: 7.3415 |
Chromosome | Chromosome/Scaffold: 3 Start: 43854904 End: 43856412 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 381 | 0 |
AACGSTAGNATVLVPEGAFVIGAVEFSGPCRDDAPIAVVIDGVLRPCASDGCHLSSDAWITFSHVSNLLLTGAGTLDGAGARRRKHKTNTLVLDGVASAT VRGLAFTDSRGFHVSIHRSTHVSAQSLRISAPATSRNTDGVHVGFSKHVSILGSAIGTGDDCVSIGPGSTDVLVSGVSCGPGHGISIGSLGKHKPNNNNG GGDEVRGVVVRNCTVKGTANGVRIKTWPGPPSSSSAPAGGLAYNITFEDVAMAGVQNPVVIDQHYCPHGSCGGATARGRPSLVQISEVVFRRIRGTASGE VAVRLRCSEARPCSGVRLDGVDLRCF |
Full Sequence |
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Protein Sequence Length: 439 Download |
MATVLKAVFF VVVVLLYRGH DVHGQNNGAA VHDVTVYGAS PGSKDNKRAF LTAWRAACGS 60 TAGNATVLVP EGAFVIGAVE FSGPCRDDAP IAVVIDGVLR PCASDGCHLS SDAWITFSHV 120 SNLLLTGAGT LDGAGARRRK HKTNTLVLDG VASATVRGLA FTDSRGFHVS IHRSTHVSAQ 180 SLRISAPATS RNTDGVHVGF SKHVSILGSA IGTGDDCVSI GPGSTDVLVS GVSCGPGHGI 240 SIGSLGKHKP NNNNGGGDEV RGVVVRNCTV KGTANGVRIK TWPGPPSSSS APAGGLAYNI 300 TFEDVAMAGV QNPVVIDQHY CPHGSCGGAT ARGRPSLVQI SEVVFRRIRG TASGEVAVRL 360 RCSEARPCSG VRLDGVDLRC FAGGEGEKEE DGDGEGRPCK ALFENVTGKT PGLQAMAPRV 420 KPVEDDDEEG EDLRPSDS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-55 | 42 | 378 | 353 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 7.0e-56 | 22 | 378 | 366 | + polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-56 | 27 | 378 | 364 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-67 | 58 | 380 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-73 | 19 | 379 | 373 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD62225.1 | 0 | 1 | 429 | 1 | 419 | putative Exopolygalacturonase precursor [Oryza sativa Japonica Group] |
GenBank | EAZ01129.1 | 0 | 1 | 429 | 1 | 407 | hypothetical protein OsI_23157 [Oryza sativa Indica Group] |
GenBank | EEE65794.1 | 0 | 1 | 429 | 1 | 419 | hypothetical protein OsJ_21499 [Oryza sativa Japonica Group] |
Swiss-Prot | Q6H9K0 | 0 | 24 | 378 | 2 | 346 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
RefSeq | XP_002444632.1 | 0 | 19 | 406 | 23 | 382 | hypothetical protein SORBIDRAFT_07g025130 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-17 | 112 | 320 | 100 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000002 | 60 | 378 | 37 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000002 | 60 | 378 | 37 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000002 | 60 | 378 | 37 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000002 | 60 | 378 | 37 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |