y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g51670.1 |
Family | AA3 |
Protein Properties | Length: 575 Molecular Weight: 62099.8 Isoelectric Point: 8.8114 |
Chromosome | Chromosome/Scaffold: 3 Start: 52717317 End: 52719516 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 38 | 563 | 0 |
YYDYIIIGGGTAGCPLAATLSRRYRVLLLERGGSPYDDDRVLNMAHFSDVLSDTSASSPSQRFVSEDGVINARPRVLGGGSCINAGFFTRAGAGYARAVG WDAREVVSAYRWVEDVVAFQPELGPWQAAVRRGLLETGVVPDNGFTYDHIPGTKVGGSIFDPDGRRHTAADLLRYSRPEGIDVLLRARVARILFSYKGRK PVARGVAFRDSRGRVHVAYLNRGDANEVILSAGALGSPQLLMLSGVGPADHLRSFGIDVVVDNPGVGQGMSDNPMNAIYVPSPSPVEVSLIQVVGITRFG SYIEGASGSDWSTRTAAASAQSFGMFSPQTGQLATVPPKQRTPEAISRAVEAMSRVPDAALRGGFILEKVMGPQSTGSLALRNLDPDDNPIVRFNYFAHP DDLRRCVAGIQAIERVIRSRAFSRFAYPNFAFPAMLNVTAEFPVNLVMRVRGGSEPAALEQFCRDTVMTIWHYHGGSQVGRVVDREYRVLGIDALRVIDG STFNASPGTNPQATVMMLGRYMGVKI |
Full Sequence |
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Protein Sequence Length: 575 Download |
MALFAITILS VLLCASQQAL GVNYTFMREA MYAPPVAYYD YIIIGGGTAG CPLAATLSRR 60 YRVLLLERGG SPYDDDRVLN MAHFSDVLSD TSASSPSQRF VSEDGVINAR PRVLGGGSCI 120 NAGFFTRAGA GYARAVGWDA REVVSAYRWV EDVVAFQPEL GPWQAAVRRG LLETGVVPDN 180 GFTYDHIPGT KVGGSIFDPD GRRHTAADLL RYSRPEGIDV LLRARVARIL FSYKGRKPVA 240 RGVAFRDSRG RVHVAYLNRG DANEVILSAG ALGSPQLLML SGVGPADHLR SFGIDVVVDN 300 PGVGQGMSDN PMNAIYVPSP SPVEVSLIQV VGITRFGSYI EGASGSDWST RTAAASAQSF 360 GMFSPQTGQL ATVPPKQRTP EAISRAVEAM SRVPDAALRG GFILEKVMGP QSTGSLALRN 420 LDPDDNPIVR FNYFAHPDDL RRCVAGIQAI ERVIRSRAFS RFAYPNFAFP AMLNVTAEFP 480 VNLVMRVRGG SEPAALEQFC RDTVMTIWHY HGGSQVGRVV DREYRVLGID ALRVIDGSTF 540 NASPGTNPQA TVMMLGRYMG VKIEKERMMV EGSG* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 7.0e-13 | 408 | 556 | 153 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 3.0e-36 | 39 | 309 | 316 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 6.0e-40 | 40 | 556 | 562 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 3.0e-50 | 39 | 557 | 568 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 2 | 568 | 581 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD29242.1 | 0 | 1 | 574 | 1 | 619 | putative mandelonitrile lyase [Oryza sativa Japonica Group] |
GenBank | EAY87068.1 | 0 | 1 | 574 | 1 | 580 | hypothetical protein OsI_08464 [Oryza sativa Indica Group] |
GenBank | EEE57571.1 | 0 | 1 | 574 | 1 | 567 | hypothetical protein OsJ_07923 [Oryza sativa Japonica Group] |
RefSeq | NP_001047732.1 | 0 | 1 | 557 | 1 | 563 | Os02g0678300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002454481.1 | 0 | 1 | 571 | 11 | 583 | hypothetical protein SORBIDRAFT_04g031910 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 39 | 567 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 39 | 567 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 39 | 567 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 39 | 567 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 39 | 567 | 27 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |