Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g56787.1 |
Family | GH28 |
Protein Properties | Length: 497 Molecular Weight: 54719.3 Isoelectric Point: 9.4085 |
Chromosome | Chromosome/Scaffold: 3 Start: 56558886 End: 56564565 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 109 | 457 | 0 |
DRGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAEILGITDEKYWTLMPALPSYGYGRERKGPRYGSLIHGQNLKDVVITGYNGSINGQGEVWWLKHRRRM LKNTRPPLVQLMWSSDIIVTNITLRNSPFWHFHPYDCTNVTVSNVTILAPVSGAPNTDGIDPDSCQDVLIENCYISVGDDAIAVKSGWDQYGIAYGRPSS NILIRNVAVRSLVSAGISIGSEMSGGVANVTVENVRIWDSRRGVRIKTATGRGGYIRNISYRNITFDNVRAGIVIKVDYNEHADDGYDRNAFPDITGISF KEIHGWGVRVPVRAHGSNIIPIKDVTFQDMSVGISYKKKHIFQCSYIEG |
Full Sequence |
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Protein Sequence Length: 497 Download |
MVETSGGRWS RLHLLHGQRR GVAAFLAANK TLLAAVWVAG FTLVFLWQST SVLVRGGAGL 60 GLRSASWRPP PRLRPGAYNL TDFGGVGDGR TLNTQAFERA VEAIAALADR GGGQLNVPPG 120 RWLTAPFNLT SHMTLFLAEG AEILGITDEK YWTLMPALPS YGYGRERKGP RYGSLIHGQN 180 LKDVVITGYN GSINGQGEVW WLKHRRRMLK NTRPPLVQLM WSSDIIVTNI TLRNSPFWHF 240 HPYDCTNVTV SNVTILAPVS GAPNTDGIDP DSCQDVLIEN CYISVGDDAI AVKSGWDQYG 300 IAYGRPSSNI LIRNVAVRSL VSAGISIGSE MSGGVANVTV ENVRIWDSRR GVRIKTATGR 360 GGYIRNISYR NITFDNVRAG IVIKVDYNEH ADDGYDRNAF PDITGISFKE IHGWGVRVPV 420 RAHGSNIIPI KDVTFQDMSV GISYKKKHIF QCSYIEGRVI GSVFPKPCEN LDVYDEQWQL 480 VKRAAILNST EVDYDI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-30 | 75 | 413 | 355 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-31 | 68 | 468 | 418 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-37 | 77 | 440 | 382 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-43 | 176 | 455 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-65 | 77 | 394 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY87758.1 | 0 | 1 | 486 | 1 | 508 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
RefSeq | NP_001140630.1 | 0 | 77 | 496 | 76 | 495 | hypothetical protein LOC100272705 [Zea mays] |
RefSeq | XP_002326133.1 | 0 | 1 | 496 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002452925.1 | 0 | 77 | 496 | 81 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
RefSeq | XP_002516244.1 | 0 | 1 | 496 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 9e-25 | 122 | 442 | 52 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |