Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g57440.1 |
Family | PL4 |
Protein Properties | Length: 735 Molecular Weight: 81387 Isoelectric Point: 6.9941 |
Chromosome | Chromosome/Scaffold: 3 Start: 57067341 End: 57070068 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 168 | 689 | 0 |
RLVMLRGSSGFYCYAILEHASEWPALNVSQVRLAFKLNPTRFNYMAVSDGIQRYMPAAADRDAPRGTPLAYQEAVLLVNASEPRFTGEVDDKYQYSLDNK DNHVHGWIAAAGDATTVPMGFWIITPSNEFKSGGPTKRELTSHIGPTSVTMFLGTHYVGDDIVAKINAGEQWKKVLGPMFIYLNSSPNPNPKRGDFQFHD MWKDAKAQAKAEVSKWPYSFPVSPDFHKAVERGSVTGRLLVRDRYVSGNDMPARLAYVGLAAPGQPGSWATESKGYQFWTRVWASNGSFAIGDVRAGEYN LYGWVPGFLGDYMYGTTITVASCNNVSLGDLVFEPPRSGRTLWEIGVPDRSAAEFFIPVPNPRNVNKLFLTKDRYRQYGLWERYADLYPAGDPIFTVGES HHSKDWFFAHVTRHVGTDEEASTARHIRFDLASVVTHGIYTLRVALSAAHYSRLELRVNGAPAAAGDRQSAPSMGLFMTPKFGDSNAIARHAEHGTWRSF EFKIEGRLLAVGENNINITQAR |
Full Sequence |
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Protein Sequence Length: 735 Download |
MSTAAVLMIL QLFAAAAGAP GGGVLLHVES HQVVLDNGVV QVWVSKPQGQ ITAVRYGDDP 60 GNLLHFTGRS ATGVMNSGGY WDLIWNFPGP GRPEGMTDVL DGTEFEVVSW SEEQVEVSFR 120 STYDPSRQDS VRLNVDKRCV LTDRSAQTFA MNLTGWMGLL LAIDHFARLV MLRGSSGFYC 180 YAILEHASEW PALNVSQVRL AFKLNPTRFN YMAVSDGIQR YMPAAADRDA PRGTPLAYQE 240 AVLLVNASEP RFTGEVDDKY QYSLDNKDNH VHGWIAAAGD ATTVPMGFWI ITPSNEFKSG 300 GPTKRELTSH IGPTSVTMFL GTHYVGDDIV AKINAGEQWK KVLGPMFIYL NSSPNPNPKR 360 GDFQFHDMWK DAKAQAKAEV SKWPYSFPVS PDFHKAVERG SVTGRLLVRD RYVSGNDMPA 420 RLAYVGLAAP GQPGSWATES KGYQFWTRVW ASNGSFAIGD VRAGEYNLYG WVPGFLGDYM 480 YGTTITVASC NNVSLGDLVF EPPRSGRTLW EIGVPDRSAA EFFIPVPNPR NVNKLFLTKD 540 RYRQYGLWER YADLYPAGDP IFTVGESHHS KDWFFAHVTR HVGTDEEAST ARHIRFDLAS 600 VVTHGIYTLR VALSAAHYSR LELRVNGAPA AAGDRQSAPS MGLFMTPKFG DSNAIARHAE 660 HGTWRSFEFK IEGRLLAVGE NNINITQARA FNKFLGVMYD YLRLEAPGSH ATSMNIWSWF 720 VILFQCTTGA LLFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-26 | 398 | 498 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-39 | 510 | 705 | 197 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 9.0e-54 | 26 | 356 | 332 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-69 | 26 | 256 | 232 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 21 | 709 | 45 | 691 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABI15897.1 | 0 | 32 | 707 | 2 | 625 | putative rhamnogalacturonate lyase [Triticum turgidum subsp. dicoccoides] |
DDBJ | BAF29096.2 | 0 | 21 | 707 | 45 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
GenBank | EEC68814.1 | 0 | 21 | 709 | 45 | 648 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
RefSeq | NP_001066077.1 | 0 | 21 | 709 | 45 | 678 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |