| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi3g59440.1 |
| Family | GT5 |
| Protein Properties | Length: 675 Molecular Weight: 73524.1 Isoelectric Point: 6.6612 |
| Chromosome | Chromosome/Scaffold: 3 Start: 58612245 End: 58616897 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 184 | 667 | 0 |
| NVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPKYGDYAEACDLGVRKHYKVAGQESEVTYFHSYIDGVDFVFLEAPPFRHLHNDIYGGKRT DVLKRMILFCKAAVEVPWYAPCGGVVYGDGNLVFIANDWHTALLPVYLKAYYRDNALMQYARSVLVIHNIAHQGRGPVEDFFDMDLPGHYIDHFKLYDPT GGEHNNVFAAGLKMADRVVTVSHGYMWELKTIEGGWGLHDIINQNDWKLHGIVNGIDTAEWNPEVDTHLHSDDYTNYTFETLDTGKRQCKAALQRELGLQ VRDDVPVIGFIGRLDRQKGVDLIAEAMPWITQQDVQLVMLGTGRADLEDMLRRFEGEHRDKVRGWVGFSVKMAHRITAGADVLLMPSLFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFGGTGLGWTFDRADAGRMIDALGHCLNTYWNYKESWRGLQQRGMSQDLSWDHAAELYEDVL | |||
| Full Sequence |
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| Protein Sequence Length: 675 Download |
| MSGAVASSSA AFLLLVANSS SSLRRRRSRV STAVRSYGAA GTRLHWARRG FTWDGAVLCA 60 ASAAAGGEEG AAAGESSKGV SVQRGKVKAA RNKDPASSPK AATSALKQDS SVAKQNGAAV 120 SRDESGARVA ESTAASGYWK DVVVAEPVEA KVDAAGDAEV ATSAADDSEN KGSYVPLAGP 180 NVMNVVVVAS ECAPFCKTGG LGDVVGALPK ALARRGHRVM VVIPKYGDYA EACDLGVRKH 240 YKVAGQESEV TYFHSYIDGV DFVFLEAPPF RHLHNDIYGG KRTDVLKRMI LFCKAAVEVP 300 WYAPCGGVVY GDGNLVFIAN DWHTALLPVY LKAYYRDNAL MQYARSVLVI HNIAHQGRGP 360 VEDFFDMDLP GHYIDHFKLY DPTGGEHNNV FAAGLKMADR VVTVSHGYMW ELKTIEGGWG 420 LHDIINQNDW KLHGIVNGID TAEWNPEVDT HLHSDDYTNY TFETLDTGKR QCKAALQREL 480 GLQVRDDVPV IGFIGRLDRQ KGVDLIAEAM PWITQQDVQL VMLGTGRADL EDMLRRFEGE 540 HRDKVRGWVG FSVKMAHRIT AGADVLLMPS LFEPCGLNQL YAMAYGTVPV VHAVGGLRDT 600 VAPFDPFGGT GLGWTFDRAD AGRMIDALGH CLNTYWNYKE SWRGLQQRGM SQDLSWDHAA 660 ELYEDVLVKA KYQW* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-83 | 183 | 663 | 509 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 3.0e-136 | 183 | 665 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 3.0e-169 | 183 | 667 | 503 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 183 | 670 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 184 | 667 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK81729.1 | 0 | 1 | 674 | 1 | 694 | AF395537_1 soluble starch synthase II-2 [Oryza sativa] |
| GenBank | ABY56824.3 | 0 | 12 | 674 | 12 | 674 | starch synthase IIb precursor [Triticum aestivum] |
| GenBank | ACY56195.1 | 0 | 1 | 674 | 1 | 694 | soluble starch synthase II-2 [Oryza sativa Indica Group] |
| GenBank | EEC73999.1 | 0 | 1 | 674 | 1 | 694 | hypothetical protein OsI_08916 [Oryza sativa Indica Group] |
| Swiss-Prot | Q6Z2T8 | 0 | 1 | 674 | 1 | 694 | SSY22_ORYSJ RecName: Full=Soluble starch synthase 2-2, chloroplastic/amyloplastic; AltName: Full=Soluble starch synthase II-2; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 183 | 668 | 10 | 509 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 3vue_A | 0 | 183 | 668 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 183 | 671 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 183 | 673 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 183 | 673 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| HO777841 | 312 | 364 | 675 | 0 |
| HO777841 | 189 | 176 | 364 | 0 |
| HO781048 | 392 | 284 | 675 | 0 |
| HO445868 | 438 | 238 | 675 | 0 |
| HO781048 | 43 | 245 | 287 | 0.63 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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