Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi4g00840.1 |
Family | CE8 |
Protein Properties | Length: 342 Molecular Weight: 37535.2 Isoelectric Point: 6.5088 |
Chromosome | Chromosome/Scaffold: 4 Start: 424249 End: 425657 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 47 | 330 | 0 |
YISQNKPADFNSIQKAIDSIPVGNNQWIRLHIAAGVYHEKVKVPQNKSYILLEGEGRDQTVIEWGDHAGNNGDTDTANSATFASYADDSMARYITFKNSH DGVKNMGPALAALVSGDRSSFHDCSFISVQDTLSDLAGRHYYENCYIEGSVDFIFGNAQSIFQGCEVSTGKSSVRQGFITAQGRESEEKDTGFVFKSCKV GGVTPVYLGRAWSAYARVIFYRTDMSNIIVSRGWDAWNSVGNESKMMMVESECTGPGSNRTGRVPWSKELRPDKISRFLDLSYI |
Full Sequence |
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Protein Sequence Length: 342 Download |
MATKLRLELL AVLSMAAIGI GVLDFMAIIT PQHCYAAGTT TVVRHIYISQ NKPADFNSIQ 60 KAIDSIPVGN NQWIRLHIAA GVYHEKVKVP QNKSYILLEG EGRDQTVIEW GDHAGNNGDT 120 DTANSATFAS YADDSMARYI TFKNSHDGVK NMGPALAALV SGDRSSFHDC SFISVQDTLS 180 DLAGRHYYEN CYIEGSVDFI FGNAQSIFQG CEVSTGKSSV RQGFITAQGR ESEEKDTGFV 240 FKSCKVGGVT PVYLGRAWSA YARVIFYRTD MSNIIVSRGW DAWNSVGNES KMMMVESECT 300 GPGSNRTGRV PWSKELRPDK ISRFLDLSYI SADGWLDAQP R* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 7.0e-84 | 43 | 336 | 299 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 2.0e-93 | 35 | 340 | 314 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 1.0e-94 | 6 | 338 | 351 | + Probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-99 | 36 | 336 | 312 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 2.0e-111 | 18 | 340 | 331 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 46 | 340 | 45 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 33 | 341 | 29 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
RefSeq | XP_002263748.1 | 0 | 46 | 340 | 32 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 46 | 340 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002455508.1 | 0 | 33 | 341 | 30 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 39 | 338 | 2 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-32 | 42 | 336 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-19 | 56 | 281 | 18 | 280 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-19 | 56 | 281 | 18 | 280 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-19 | 56 | 281 | 18 | 280 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |