| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi4g05050.1 |
| Family | GH28 |
| Protein Properties | Length: 452 Molecular Weight: 48543.4 Isoelectric Point: 5.1671 |
| Chromosome | Chromosome/Scaffold: 4 Start: 4122758 End: 4126546 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 415 | 0 |
| ADKGGAQLYVPKGRWLTGSFNLTSHLTLFLEKDAVIVGTKEVTEWPIVEPLPSYGQGIDLPGARHRSLINGHNVTDVVITGNNGVIDGQGLTWWNWFRSN KLNYSRPHLVEFEDSEEIVISNLTFLNSPAWAIHPVYCSNVTVNNITIQTSLDAPLSDGIVPDSCSNVCIEDSRISVSHDAISLKSGWDNYGITFGRPTS DIHICRVDLQASLGAALALGSEMSGGISDVHVDHLHIHASSKGVSFRTAPGRGGYIRDVIISDVQMEDVHVAIEFTGDWSSHPDEHFDPSALPVISGITL KNMVGTNISVAGVLSGIDGDPFTDICLSNVNFSIPDSAHSTSWSCSNIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MARLVVVVLA SVLAVLSLGR AEAQCSRYVG RTRPHSVTIT EFGAVGDGVT VNTVPFQNAI 60 FYLRSFADKG GAQLYVPKGR WLTGSFNLTS HLTLFLEKDA VIVGTKEVTE WPIVEPLPSY 120 GQGIDLPGAR HRSLINGHNV TDVVITGNNG VIDGQGLTWW NWFRSNKLNY SRPHLVEFED 180 SEEIVISNLT FLNSPAWAIH PVYCSNVTVN NITIQTSLDA PLSDGIVPDS CSNVCIEDSR 240 ISVSHDAISL KSGWDNYGIT FGRPTSDIHI CRVDLQASLG AALALGSEMS GGISDVHVDH 300 LHIHASSKGV SFRTAPGRGG YIRDVIISDV QMEDVHVAIE FTGDWSSHPD EHFDPSALPV 360 ISGITLKNMV GTNISVAGVL SGIDGDPFTD ICLSNVNFSI PDSAHSTSWS CSNISGYSEL 420 VFPEPCTDLQ SPSSNSSICS SHFSYHAFAA A* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-17 | 21 | 427 | 424 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 5.0e-20 | 32 | 423 | 402 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-23 | 34 | 397 | 373 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-25 | 135 | 414 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-39 | 37 | 378 | 388 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA99544.2 | 0 | 35 | 451 | 41 | 457 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC68574.1 | 0 | 27 | 449 | 25 | 447 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001066993.1 | 0 | 31 | 451 | 4 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068399.1 | 0 | 27 | 449 | 25 | 447 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148987.1 | 0 | 1 | 446 | 1 | 451 | polygalacturonase [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7e-36 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7e-36 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7e-36 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7e-36 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-16 | 81 | 415 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
