Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi4g09910.1 |
Family | CE8 |
Protein Properties | Length: 438 Molecular Weight: 46233 Isoelectric Point: 8.1614 |
Chromosome | Chromosome/Scaffold: 4 Start: 9375684 End: 9377260 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 76 | 358 | 0 |
IVDPKGGGDYTNITAAIADIPEGNTGRVILDLKPGVYREKVFLNLSKPYVTFKADPLNPAIIAWNDTAATPGKDGKPVGTVGSTTCAIESDYFVAYGVVF KNDAPLAKPGAKGGQAVALRVFGTKAAFYNCTIDGGQDTLYDHKGLHYFKDCIIRGSVDFIFGFGRSFYEGCDIISIVKEVAVLTAQQRTKTIEGAIESG FSFKNCSIRGEGGGQIFLGRAWGDSSRVVYAYTEMSKEVVPVGWDGWNIKQPESGPGSDARKRIGWALDLTESQAKPFIGTHY |
Full Sequence |
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Protein Sequence Length: 438 Download |
MALPLLLSMA VLASQRHTLT AAAPAAAAGA FGSWVTDNQK DFAINQALYA KKAVGNTGDT 60 IDERLAKAEA NKTTYIVDPK GGGDYTNITA AIADIPEGNT GRVILDLKPG VYREKVFLNL 120 SKPYVTFKAD PLNPAIIAWN DTAATPGKDG KPVGTVGSTT CAIESDYFVA YGVVFKNDAP 180 LAKPGAKGGQ AVALRVFGTK AAFYNCTIDG GQDTLYDHKG LHYFKDCIIR GSVDFIFGFG 240 RSFYEGCDII SIVKEVAVLT AQQRTKTIEG AIESGFSFKN CSIRGEGGGQ IFLGRAWGDS 300 SRVVYAYTEM SKEVVPVGWD GWNIKQPESG PGSDARKRIG WALDLTESQA KPFIGTHYVF 360 GDSWIRPPPT GSSPPSSKKP SSSAAASPAD SPAESPSSSF EASSPESSEA PASSKASSPA 420 KSSESYSKDK VSKKKEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 4.0e-76 | 69 | 367 | 318 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-81 | 76 | 367 | 303 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-84 | 64 | 366 | 319 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-106 | 33 | 369 | 350 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-107 | 74 | 367 | 305 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA95297.2 | 0 | 34 | 423 | 78 | 497 | Pectinesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACF22736.1 | 0 | 1 | 437 | 1 | 446 | pectinesterase family protein [Brachypodium distachyon] |
GenBank | EAY81792.1 | 0 | 26 | 369 | 41 | 398 | hypothetical protein OsI_36964 [Oryza sativa Indica Group] |
RefSeq | NP_001068464.1 | 0 | 26 | 425 | 41 | 459 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068465.1 | 0 | 38 | 423 | 2 | 417 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-30 | 76 | 366 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-25 | 76 | 366 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-19 | 82 | 251 | 15 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-19 | 82 | 251 | 15 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-19 | 82 | 251 | 15 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |