Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi4g11087.1 |
Family | GH28 |
Protein Properties | Length: 461 Molecular Weight: 49178.3 Isoelectric Point: 5.1677 |
Chromosome | Chromosome/Scaffold: 4 Start: 10855873 End: 10859477 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 425 | 0 |
ADKGGAQLYVPKGRWLTGSFNLTSHLTLFLEEGAVIIGAKESSQWPIVEPLPSYGQGLDLPGPRHLSLINGYNVTDVVITGNNGVINGQGSIWWDWLHSH ELNHSRPHLVEFLHSEEIVISNLTFLNSPAWSIHPVYCSKVKVHNVTIKTSSDAPLTDGIVPDSSSNVVIEDSTISVSHDAISIKSGWDKYGISIGKPAS DIHISRMDLQASSGAALAFGSEMSGGISDIHADNIQIHGSNKGISFKTTPGRGGYIDEVVISDVKMDDVIVAIEFTGNWSSHPDEDFDPSQLPVIGQITL KDMVGTNISVAGVLSGIDGDPFTAICLSNVNFLMAESAHSSSWSCSNVSG |
Full Sequence |
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Protein Sequence Length: 461 Download |
MRFLVLVDVC LVFLALTLAV VLGSAHSGGG RQWREQAPPG SRPHSVTITE FGAVGNGRTL 60 NTLPFQNAVF YARSFADKGG AQLYVPKGRW LTGSFNLTSH LTLFLEEGAV IIGAKESSQW 120 PIVEPLPSYG QGLDLPGPRH LSLINGYNVT DVVITGNNGV INGQGSIWWD WLHSHELNHS 180 RPHLVEFLHS EEIVISNLTF LNSPAWSIHP VYCSKVKVHN VTIKTSSDAP LTDGIVPDSS 240 SNVVIEDSTI SVSHDAISIK SGWDKYGISI GKPASDIHIS RMDLQASSGA ALAFGSEMSG 300 GISDIHADNI QIHGSNKGIS FKTTPGRGGY IDEVVISDVK MDDVIVAIEF TGNWSSHPDE 360 DFDPSQLPVI GQITLKDMVG TNISVAGVLS GIDGDPFTAI CLSNVNFLMA ESAHSSSWSC 420 SNVSGYSESV FPEPCSELHT PSSNSSMCFS LVSYSALAVA * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-17 | 32 | 435 | 433 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-22 | 44 | 388 | 353 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-22 | 144 | 406 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-24 | 43 | 406 | 375 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 9.0e-49 | 46 | 406 | 392 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC68574.1 | 0 | 30 | 459 | 21 | 448 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
RefSeq | NP_001066993.1 | 0 | 39 | 460 | 3 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068399.1 | 0 | 30 | 459 | 21 | 448 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130359.1 | 0 | 36 | 460 | 34 | 458 | hypothetical protein LOC100191454 [Zea mays] |
RefSeq | XP_002451220.1 | 0 | 32 | 460 | 20 | 448 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-34 | 44 | 404 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-34 | 44 | 404 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-34 | 44 | 404 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-34 | 44 | 404 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-17 | 90 | 424 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |