| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi4g26420.1 |
| Family | PL4 |
| Protein Properties | Length: 750 Molecular Weight: 81084.1 Isoelectric Point: 9.5199 |
| Chromosome | Chromosome/Scaffold: 4 Start: 31622944 End: 31626242 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 37 | 709 | 0 |
| GGVTLRIERHQVVVDNGLVQVTASNPQGQITAVRYLGERSNLLNFVVGGENTGGYWDVVWNYPDSGHPRGMIDMLDSTEFRVVTSTPDKVELSFRSAYDP TRRDSVRLAVDKRLVLLRGVSGFYPYAVFSHSAALPPLNITEARLAFKLGTSRFRYMAVSDKLQRAMPSAADRDPPRGRPLAYKEAVLLVNPAEPEFKGE VDDKYMYSLDNKDNKVHGWISEGTTSSSPAPASPAAVGFWVVTPSNEFKSGGPMKRELTSHVGPTALTMFMGTHYVGDAIVANIGDGENWTKVLGPVFVY LNSVPEKKQKQQKKSFWGGGRGAPVVMDPKAALWEDAKARAAAEAAKWPYNFPESPEFHKAGERATVAGRLLVRDRYLVAAGAGEDGMFPARNAYVGLAA PGQAGSWATESKGYQFWTRSAASGGFAITGVRAGLYSLYAWVPGVHGEFVSSYPVNVTGAGEVLKLGDLVFAPPRAGPTVWEMGIPDRSAAEFFVPDPNQ KLVNRLFLGPAMAAEKFRQYGLWDRYAELYPNGADPVFTVGASHYSKDWFFAHVTRKLPVVVSGSGGQQQQQYAPTTRQIKFALAAVASDGNYTLRIALA AAQMARLRIEVNPPPLESGKTRRPAAVFTTPEFGEGNAIARHGDHGTWWSFEFGIQGRMLVEGENVISITQVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 750 Download |
| MSTAAVAVLT AAVLLLVVGE ASWLPRWPPT PAPGVAGGVT LRIERHQVVV DNGLVQVTAS 60 NPQGQITAVR YLGERSNLLN FVVGGENTGG YWDVVWNYPD SGHPRGMIDM LDSTEFRVVT 120 STPDKVELSF RSAYDPTRRD SVRLAVDKRL VLLRGVSGFY PYAVFSHSAA LPPLNITEAR 180 LAFKLGTSRF RYMAVSDKLQ RAMPSAADRD PPRGRPLAYK EAVLLVNPAE PEFKGEVDDK 240 YMYSLDNKDN KVHGWISEGT TSSSPAPASP AAVGFWVVTP SNEFKSGGPM KRELTSHVGP 300 TALTMFMGTH YVGDAIVANI GDGENWTKVL GPVFVYLNSV PEKKQKQQKK SFWGGGRGAP 360 VVMDPKAALW EDAKARAAAE AAKWPYNFPE SPEFHKAGER ATVAGRLLVR DRYLVAAGAG 420 EDGMFPARNA YVGLAAPGQA GSWATESKGY QFWTRSAASG GFAITGVRAG LYSLYAWVPG 480 VHGEFVSSYP VNVTGAGEVL KLGDLVFAPP RAGPTVWEMG IPDRSAAEFF VPDPNQKLVN 540 RLFLGPAMAA EKFRQYGLWD RYAELYPNGA DPVFTVGASH YSKDWFFAHV TRKLPVVVSG 600 SGGQQQQQYA PTTRQIKFAL AAVASDGNYT LRIALAAAQM ARLRIEVNPP PLESGKTRRP 660 AAVFTTPEFG EGNAIARHGD HGTWWSFEFG IQGRMLVEGE NVISITQVRA FGAFLGVMYD 720 YIRLEAPPAS RRDPTAAAAA MNGTSSIAA* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 5.0e-23 | 399 | 505 | 107 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-39 | 517 | 725 | 212 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-61 | 47 | 345 | 302 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-76 | 41 | 237 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 31 | 734 | 41 | 696 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 31 | 727 | 41 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066077.1 | 0 | 31 | 734 | 41 | 683 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152385.1 | 0 | 28 | 738 | 38 | 719 | lyase [Zea mays] |
| RefSeq | XP_002441731.1 | 0 | 6 | 734 | 22 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
