| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi4g31250.1 |
| Family | GH28 |
| Protein Properties | Length: 532 Molecular Weight: 57656.7 Isoelectric Point: 9.5713 |
| Chromosome | Chromosome/Scaffold: 4 Start: 37045204 End: 37049358 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 139 | 494 | 0 |
| VAAISERGGGRLTVPAGRWLTAPFNLTSGMTLFLASGAEILGIQDERYWPLMPPLPSYGYGREHKGPRYGSLIHGQDLKDVTVTGHNGTINGQGKSWWTK FRRKLLNHTRGPLVQLMRSSNIIISNITLQDSPFWTLHTYDCKNVTISETTILAPIVGAPNTDGIDPDSCENVMIQNCYISVGDDGVAIKSGWDQYGIAY GRPSTNITIRDVTIRSMVSAGVSIGSEMSGGVSNVLVENVHIWSSRRGVRIKTAPGRGAYVNNIVYRNITLENVRVGIVIKTDYNEHPDEGFNPKAVPIV GNISYTSIHGQGVRVPVRIQGSAEIPVKNVTFHDMSVGILDKKHHVFQCSYVQGQV | |||
| Full Sequence |
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| Protein Sequence Length: 532 Download |
| MEVGVGVSSP RAAAASSAAA AAAAAAAVGP PVLSSPRAAL SNRGGAHQFH HRRWAPAISP 60 SYRAYLVALW LVGFVLVFLW QNTSMGRVRL YNSPPMPKRA PSGAVMGQWV ASPPVYDLRE 120 FGGIGDGRTL NTAAFEAAVA AISERGGGRL TVPAGRWLTA PFNLTSGMTL FLASGAEILG 180 IQDERYWPLM PPLPSYGYGR EHKGPRYGSL IHGQDLKDVT VTGHNGTING QGKSWWTKFR 240 RKLLNHTRGP LVQLMRSSNI IISNITLQDS PFWTLHTYDC KNVTISETTI LAPIVGAPNT 300 DGIDPDSCEN VMIQNCYISV GDDGVAIKSG WDQYGIAYGR PSTNITIRDV TIRSMVSAGV 360 SIGSEMSGGV SNVLVENVHI WSSRRGVRIK TAPGRGAYVN NIVYRNITLE NVRVGIVIKT 420 DYNEHPDEGF NPKAVPIVGN ISYTSIHGQG VRVPVRIQGS AEIPVKNVTF HDMSVGILDK 480 KHHVFQCSYV QGQVIGYVFP VPCKNLDLYN EQREMVKQST LQNISDIDYS F* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-24 | 112 | 448 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-27 | 120 | 503 | 400 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-30 | 117 | 475 | 368 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-42 | 211 | 490 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-63 | 57 | 433 | 400 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84640.1 | 0 | 44 | 531 | 38 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
| GenBank | EEE69791.1 | 0 | 106 | 531 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063274.1 | 0 | 44 | 531 | 38 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002277239.1 | 0 | 44 | 531 | 8 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002460269.1 | 0 | 34 | 531 | 27 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 117 | 472 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 117 | 472 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 117 | 472 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 117 | 472 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-22 | 157 | 470 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
