| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi4g33660.1 |
| Family | GH28 |
| Protein Properties | Length: 462 Molecular Weight: 50387.9 Isoelectric Point: 6.4307 |
| Chromosome | Chromosome/Scaffold: 4 Start: 39367236 End: 39369768 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 54 | 386 | 0 |
| AVNACAAAGGGRVLLPAPGDYLTATVHLRSGVVLDVPPGARLLGGTRQGDYPPESRRWYVVLAENTTGAGVAGGGEINGQGGAFVVTPSDQKNIMVSWNT TGDCEGDECRPRLVGFIDSKDVRIHDITLNQPAYWCLHLVRCDNSVIRNVSIYGDFDTPNNDGIDIEDSNNTVITDCHIDTGDDAICPKSSTGPVYNLTA TNCWIRTKSCAIKFGSASFFNFERLLFDNITIVDAHRGLGMQIRDGGNVSDVMFSNIKMRTRYYHPSWWGRAEPIYITTCPRHPGYKEGTISDVRFINIS SVSENGVFLAGSRHGLLRNLKFENVDLTYKRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 462 Download |
| MALSPLLLAA VSVLLLLPPP QAAQSAASPR VFSVVDYGAA GDGARYDTAA IQAAVNACAA 60 AGGGRVLLPA PGDYLTATVH LRSGVVLDVP PGARLLGGTR QGDYPPESRR WYVVLAENTT 120 GAGVAGGGEI NGQGGAFVVT PSDQKNIMVS WNTTGDCEGD ECRPRLVGFI DSKDVRIHDI 180 TLNQPAYWCL HLVRCDNSVI RNVSIYGDFD TPNNDGIDIE DSNNTVITDC HIDTGDDAIC 240 PKSSTGPVYN LTATNCWIRT KSCAIKFGSA SFFNFERLLF DNITIVDAHR GLGMQIRDGG 300 NVSDVMFSNI KMRTRYYHPS WWGRAEPIYI TTCPRHPGYK EGTISDVRFI NISSVSENGV 360 FLAGSRHGLL RNLKFENVDL TYKRWTNYTG GLYDYRPGCQ EMVKHRTGGM MLEHISGLEI 420 DNVKMRWSKG SLKGWDVNPL LFRPSTIDGL SFHDWQSLDV Q* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-8 | 163 | 256 | 94 | + Probable polygalacturonase At3g15720 | ||
| PLN02155 | PLN02155 | 3.0e-8 | 159 | 389 | 253 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-10 | 164 | 383 | 236 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-14 | 164 | 382 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-35 | 30 | 313 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84787.1 | 0 | 30 | 460 | 25 | 455 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
| GenBank | EEE69946.1 | 0 | 30 | 460 | 25 | 454 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063526.1 | 0 | 30 | 460 | 25 | 450 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148969.1 | 0 | 28 | 461 | 24 | 457 | polygalacturonase [Zea mays] |
| RefSeq | XP_002462564.1 | 0 | 30 | 461 | 31 | 462 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-18 | 30 | 374 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-18 | 30 | 374 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-18 | 30 | 374 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-18 | 30 | 374 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000000001 | 14 | 313 | 139 | 488 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
