y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi4g38840.1 |
Family | CE8 |
Protein Properties | Length: 405 Molecular Weight: 42380.4 Isoelectric Point: 7.7391 |
Chromosome | Chromosome/Scaffold: 4 Start: 43599729 End: 43600943 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 75 | 371 | 0 |
TVDRHGCGNFSSIQKAIDAVPDNNNHIGTRTLITVGAGTFHEKVTVWSNKTGLTIHGRGNLNSVVAWDDTAGTTGGCTPCSATFTVLAAGFVAYNVTFRN AAPPAGPGASGGQAVALRVAGDQAAFHWCGFYSAQDTLLDEQGRHFFRGCYVEGSIDFIFGNGRSLYLGCTISSVAAAASGSNAGGITGSVTAQGRRTEA EKTGFAFVRCSVVGTGSVWLGRAWGAYATVVFAETYLAGIVAPEGWNDWNDPARQGSVMFGEYESSGPGANKDGRVAYARQLDRRQAAPFMDVDYID |
Full Sequence |
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Protein Sequence Length: 405 Download |
MRRASRSCSR AGRVIWASSA ISSALLAILL ASTHLAPSPS TNPPSLLDGR RRHCDEEAKW 60 ASSIASRLNI TQILTVDRHG CGNFSSIQKA IDAVPDNNNH IGTRTLITVG AGTFHEKVTV 120 WSNKTGLTIH GRGNLNSVVA WDDTAGTTGG CTPCSATFTV LAAGFVAYNV TFRNAAPPAG 180 PGASGGQAVA LRVAGDQAAF HWCGFYSAQD TLLDEQGRHF FRGCYVEGSI DFIFGNGRSL 240 YLGCTISSVA AAASGSNAGG ITGSVTAQGR RTEAEKTGFA FVRCSVVGTG SVWLGRAWGA 300 YATVVFAETY LAGIVAPEGW NDWNDPARQG SVMFGEYESS GPGANKDGRV AYARQLDRRQ 360 AAPFMDVDYI DGGQWALPPL ALAAPLLALP HGDDSDRASG GQVM* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-75 | 72 | 375 | 310 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-86 | 71 | 375 | 306 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-93 | 72 | 375 | 305 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 8.0e-101 | 65 | 375 | 317 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-103 | 69 | 375 | 307 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 54 | 378 | 86 | 401 | unnamed protein product [Vitis vinifera] |
GenBank | EEC85099.1 | 0 | 43 | 379 | 156 | 493 | hypothetical protein OsI_32473 [Oryza sativa Indica Group] |
RefSeq | NP_001063991.1 | 0 | 43 | 379 | 58 | 395 | Os09g0571100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002264941.1 | 0 | 72 | 378 | 13 | 311 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002459865.1 | 0 | 54 | 380 | 81 | 402 | hypothetical protein SORBIDRAFT_02g012560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 7.00649e-44 | 76 | 375 | 7 | 303 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 1e-39 | 74 | 375 | 9 | 307 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 5e-16 | 84 | 364 | 18 | 328 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 5e-16 | 84 | 364 | 18 | 328 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 5e-16 | 84 | 364 | 18 | 328 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |