CAZyme Information

Basic Information
SpeciesBrachypodium distachyon
Cazyme IDBradi5g00540.1
FamilyGH13
Protein PropertiesLength: 902 Molecular Weight: 99565.7 Isoelectric Point: 4.857
ChromosomeChromosome/Scaffold: 5 Start: 517474 End: 529100
Descriptionlimit dextrinase
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH133067093e-31
  MQHLWKLSDAGLTHVHLLPSFHFAGVDDIKSNWKNVDESELAKLPPGSDMQQAAIVAIQEDDPYNWGYNPVLWGVPKGSYASNPDGPSRIIEYRQMVQAL
  NRLGLRVVMDVVYNHLNSSGPSGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKHTMMRAKAA
  IQSLTRDSHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRMRDAINGGNPFGNPLQQGFSTGLFLEPNGFYQGNEEDTRLSLATYAD
  HIQIGLAGNLRDYVLVSHTGEAKKGSEIHTFDGLPVGYTSSPIETINYVSAHDNETLFDVISLKTPMELSIDERCRINQLASSMMALSQGIPFFHAGDEI
  LRSK
Full Sequence
Protein Sequence     Length: 902     Download
MAVGEGAAAV DLATAEAAEV FMPDARAYWV TASLIAWDVS DQEASISLYA SRDATIRLSP    60
NRGIEGYDSK VELQPEHAGL PKSVTQKFPF ISSYKAFRVP SSVDFSSLVK CQLVIASFGA    120
DGKHRDVTGL QLPGVLDDMF AYTGPLGAVF SGESVDLYLW APTAQDVSVC FFDSPAGPLL    180
ETVQMKELNG VWSITGPRDW ENRYYLYEVN VYHPSKAQVE KCLASDPYAR GLSANGARTW    240
LVDINNEALK PASWDELADE KPKLDSFSDI TIYELHIRDF SVHDSTVDCN SQGGFSAFTY    300
QDSAGMQHLW KLSDAGLTHV HLLPSFHFAG VDDIKSNWKN VDESELAKLP PGSDMQQAAI    360
VAIQEDDPYN WGYNPVLWGV PKGSYASNPD GPSRIIEYRQ MVQALNRLGL RVVMDVVYNH    420
LNSSGPSGIS SVLDKIVPGY YVRRDTNGQI ENSAAMNNTA SEHFMVDRLI VDDLLNWAVN    480
YKVDGFRFDL MGHIMKHTMM RAKAAIQSLT RDSHGVDGSK IYLYGEGWDF AEVARNQRGI    540
NGSQLNMSGT GIGSFNDRMR DAINGGNPFG NPLQQGFSTG LFLEPNGFYQ GNEEDTRLSL    600
ATYADHIQIG LAGNLRDYVL VSHTGEAKKG SEIHTFDGLP VGYTSSPIET INYVSAHDNE    660
TLFDVISLKT PMELSIDERC RINQLASSMM ALSQGIPFFH AGDEILRSKS IDRDSYNSGD    720
WFNKLDFTYE TNNWGVGLPP SEKNEDNWPI MKPRLENPSF KPAKGHILAV LDNFLDILKI    780
RYSSPLFRLS TASDVKQRVH FHNTGPSSIP GVIVMSIEDA RNDRPEMAQL DANFSSVVTV    840
FNVCPDEVSM DIPALASMGL ELHPVQANSC DALVRQSSYE AGKGRFTVPR RTASVFVEPR    900
R* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam11852DUF33728.0e-87728900173+
TIGR02104pulA_typeI5.0e-138137854731+
cd11341AmyAc_Pullulanase_LD-like2.0e-170269733475+
PLN02877PLN02877024900878+
TIGR02103pullul_strch025900911+
Gene Ontology
GO TermDescription
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
GO:0043169cation binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAD04189.1019001903limit dextrinase [Hordeum vulgare subsp. vulgare]
GenBankAAD34347.10190058961AF122049_1 limit dextrinase [Hordeum vulgare]
GenBankAAF98802.1019001904limit dextrinase [Hordeum vulgare subsp. vulgare]
GenBankABL84490.101990079962limit dextrinase type starch debranching enzyme [Triticum aestivum]
RefSeqXP_002446086.10190065965hypothetical protein SORBIDRAFT_06g001540 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB4aio_A0219002883A Chain A, Peanut Peroxidase
PDB2y5e_A0219002883A Chain A, Peanut Peroxidase
PDB2y4s_A0219002883A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
PDB2fhf_A0259001771070A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
PDB2fhc_A0259001771070A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
Metabolic Pathways
Pathway NameReactionECProtein Name
starch degradation IRXN-1824EC-3.2.1.41pullulanase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO8722433415268660
JG9325492874547400
JG9373682865728570
GO8934992656208840
CJ6898252424627030
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_030_00024.1
Arabidopsis lyrata487216
Arabidopsis thalianaAT5G04360.1
Brachypodium distachyonBradi5g00540.2
Brassica rapaBra009461
Carica papayaevm.model.supercontig_53.158
Capsella rubellaCarubv10000153m
Chlamydomonas reinhardtiiCre11.g476650.t1.3
Citrus clementinaCiclev10031035m
Citrus sinensisorange1.1g002079morange1.1g002161morange1.1g002787m
Cucumis sativusCucsa.308730.1
Eucalyptus grandisEucgr.G02746.1Eucgr.G02746.2
Fragaria vescamrna23425.1-v1.0-hybrid
Glycine maxGlyma10g34080.1
Gossypium raimondiiGorai.009G305300.12Gorai.009G305300.11Gorai.009G305300.1Gorai.009G305300.10Gorai.009G305300.2
Gorai.009G305300.3Gorai.009G305300.4Gorai.009G305300.5Gorai.009G305300.6Gorai.009G305300.7
Gorai.009G305300.9Gorai.009G305300.8
Linum usitatissimumLus10038675
Malus domesticaMDP0000142103
Manihot esculentacassava4.1_004771m
Mimulus guttatusmgv1a001246m
Physcomitrella patensPp1s142_79V6.1.481.888
Phaseolus vulgarisPhvul.007G139400.1
Populus trichocarpaPotri.010G229300.4Potri.010G229300.1Potri.010G229300.2Potri.010G229300.3
Prunus persicappa000905m
Ricinus communis29475.m000230
Setaria italicaSi011852m
Selaginella moellendorffii165275
Sorghum bicolorSb06g001540.1
Thellungiella halophilaThhalv10012585m
Vitis viniferaGSVIVT01016183001
Volvox carteriVocar20014607m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny