Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi5g01135.1 |
Family | PL1 |
Protein Properties | Length: 451 Molecular Weight: 48571.5 Isoelectric Point: 7.925 |
Chromosome | Chromosome/Scaffold: 5 Start: 1017929 End: 1023155 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 168 | 369 | 0 |
PLWIIFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDAVSIFGSSHVWVDHCSL SNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYLKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRY LA |
Full Sequence |
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Protein Sequence Length: 451 Download |
MAEGAASTRR WAAAVGAVLV LTLLVFAVSG GRLRAGSTAA ASGARRWLRD STSLLPAASR 60 RSGGEDDASV DDPETVASQV HMSIKNSTAR RNLGYLSCGT GNPIDDCWRC DSDWHNNRQR 120 LADCGIGFGR NAIGGRDGKL YVVTDAGDDD PVNPKEGTLR YAVIQDEPLW IIFKRDMVIT 180 LKQELIMNSF KTIDGRGANV HIANGACITI QYVTNVIIHG LHIHDCRPTG NAMVRSSPSH 240 YGWRTMADGD AVSIFGSSHV WVDHCSLSNC ADGLVDAIMG STAITVSNNY FTHHNEVMLL 300 GHSDSYLKDK AMQVTIAFNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI 360 NSQGNRYLAP TNPFAKEVTK RVETAQTTWK GWNWRSEGDL LLNGAFFTPS GAGASASYSR 420 ASSLGAKSSS MVGTITSGAG VLSCRKGSSC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-27 | 189 | 382 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-72 | 182 | 367 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-81 | 176 | 370 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE02420.2 | 0 | 33 | 450 | 41 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC76710.1 | 0 | 33 | 450 | 41 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
GenBank | EEE60442.1 | 0 | 69 | 450 | 62 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
RefSeq | NP_001052103.1 | 0 | 33 | 436 | 41 | 459 | Os04g0137100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141589.1 | 0 | 25 | 450 | 41 | 466 | hypothetical protein LOC100273705 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 102 | 443 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 102 | 443 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-18 | 121 | 368 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.00000000000003 | 182 | 367 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1pe9_B | 0.00000000000004 | 192 | 440 | 90 | 357 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |