Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi5g04640.1 |
Family | GH10 |
Protein Properties | Length: 480 Molecular Weight: 53365.1 Isoelectric Point: 6.0256 |
Chromosome | Chromosome/Scaffold: 5 Start: 5818610 End: 5824053 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 130 | 412 | 0 |
QMSRDFPLGSAISKTILGNRPYQEWFSKRFNAAVFENELKWYATEPVPGKEDYSLADQLLNFVQSSDAVARGHNIFWEDPKYTPGWVKNLTGEQLRAAVA GRIESLLSRYKGDFVHWDVSNEMLHFGFYEDRLGRNATAEFFRTARRADPLATLFLNDFNVVEVCDDLSSSADEYVARLRELADAGVTFEGIGLEGHFGK PNVPYVRAVLDKLGTLRLPVWLTEVDISSSLDQKTQAAYLEEVLREGFAHPSVDGMMLWTAMDANGSCYQMCLTDRNMSNLPA |
Full Sequence |
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Protein Sequence Length: 480 Download |
MSAATVYSFS CWVRIEGPAT AHVKAKILSL DNAASQCLGT AMVRNDCWSF LKGGFSLGSA 60 SPTSVLYFQT ASPNASTVSI RSASLQPFSP EQWSQHREDR IQLIRKRFVN IHVSDSNGSR 120 VIGAKVSVHQ MSRDFPLGSA ISKTILGNRP YQEWFSKRFN AAVFENELKW YATEPVPGKE 180 DYSLADQLLN FVQSSDAVAR GHNIFWEDPK YTPGWVKNLT GEQLRAAVAG RIESLLSRYK 240 GDFVHWDVSN EMLHFGFYED RLGRNATAEF FRTARRADPL ATLFLNDFNV VEVCDDLSSS 300 ADEYVARLRE LADAGVTFEG IGLEGHFGKP NVPYVRAVLD KLGTLRLPVW LTEVDISSSL 360 DQKTQAAYLE EVLREGFAHP SVDGMMLWTA MDANGSCYQM CLTDRNMSNL PAGDVVDKLL 420 GEWQTREVLG ATNDRGSFNF SAFLGEYKLY VAYLNSSAEG TFSLARSDDT KHISIRLLP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 8.0e-30 | 138 | 392 | 275 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-52 | 134 | 394 | 277 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-67 | 168 | 416 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC78941.1 | 0 | 1 | 479 | 46 | 524 | hypothetical protein OsI_19385 [Oryza sativa Indica Group] |
GenBank | EEE63172.1 | 0 | 1 | 479 | 46 | 524 | hypothetical protein OsJ_17981 [Oryza sativa Japonica Group] |
RefSeq | NP_001055145.1 | 0 | 12 | 479 | 11 | 478 | Os05g0304900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152556.1 | 0 | 1 | 479 | 88 | 567 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002446197.1 | 0 | 1 | 477 | 89 | 565 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 3e-30 | 137 | 392 | 15 | 272 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g4f_B | 3e-30 | 137 | 394 | 16 | 272 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g4f_A | 3e-30 | 137 | 394 | 16 | 272 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g3j_A | 3e-30 | 137 | 394 | 16 | 272 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g3i_A | 3e-30 | 137 | 394 | 16 | 272 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV522212 | 250 | 14 | 263 | 0 |
DR965570 | 272 | 41 | 312 | 0 |
FF353430 | 240 | 121 | 359 | 0 |
GR953916 | 293 | 111 | 403 | 0 |
FL758005 | 201 | 278 | 478 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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