Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi5g18370.1 |
Family | GH28 |
Protein Properties | Length: 346 Molecular Weight: 36246.8 Isoelectric Point: 8.1584 |
Chromosome | Chromosome/Scaffold: 5 Start: 21382142 End: 21384362 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 332 | 0 |
DTKVLGTITAPPSTSAAWKWSDYWLMFQQVRGLTVTGGSAGVLDGRGQTWWPRKCKRNALKLVSCDGLELSYLSSKDSPQMHIVVSTSRGVNMTHLTITA PGDSPNTDGIHLDRSEGVQITGSTIGTGDDCVSIGSGTRFVTVDGLVCGPGHGVSVGSLGRKGSNAAVEYIDVRNVHFINTSNGARIKTWLGGQGYARSI SFTDIKFTNVDHPVVINQFYVDRAIQSMGGVAIRNITYTNLNGTSSQKTAVAFDCSESGSCTGIHVNSMAITGTDGQATVARCQNVQGD |
Full Sequence |
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Protein Sequence Length: 346 Download |
MGLTIIGVRT AILLLLACLA AARGQERAFS VVNFGARGDG TTDDTKVLGT ITAPPSTSAA 60 WKWSDYWLMF QQVRGLTVTG GSAGVLDGRG QTWWPRKCKR NALKLVSCDG LELSYLSSKD 120 SPQMHIVVST SRGVNMTHLT ITAPGDSPNT DGIHLDRSEG VQITGSTIGT GDDCVSIGSG 180 TRFVTVDGLV CGPGHGVSVG SLGRKGSNAA VEYIDVRNVH FINTSNGARI KTWLGGQGYA 240 RSISFTDIKF TNVDHPVVIN QFYVDRAIQS MGGVAIRNIT YTNLNGTSSQ KTAVAFDCSE 300 SGSCTGIHVN SMAITGTDGQ ATVARCQNVQ GDTSGNVSPH IPCLG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-68 | 46 | 344 | 309 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-70 | 49 | 329 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-72 | 30 | 339 | 365 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 4.0e-73 | 29 | 336 | 358 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-76 | 26 | 344 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC75354.1 | 0 | 12 | 344 | 6 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
DDBJ | BAC57279.1 | 0 | 47 | 343 | 115 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 20 | 343 | 44 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002448332.1 | 0 | 30 | 339 | 27 | 400 | hypothetical protein SORBIDRAFT_06g025345 [Sorghum bicolor] |
RefSeq | XP_002515526.1 | 0 | 9 | 344 | 3 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-22 | 50 | 329 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-22 | 50 | 329 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-22 | 50 | 329 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-22 | 50 | 329 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-22 | 50 | 329 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |