| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000293m |
| Family | CBM22 |
| Protein Properties | Length: 753 Molecular Weight: 84499.8 Isoelectric Point: 6.0061 |
| Chromosome | Chromosome/Scaffold: 6 Start: 11787613 End: 11791698 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 27 | 162 | 3.1e-31 |
| IILNPNFEDGLNNWTGRACKIVLHESMDGGRITPLSGKVFASATQRKDTWNGIQQEITGRFQRKRVYEVTASVRIFGNNVTSATVQATLWVLNANQREQY IGITNVQATDKNWVELKGKFIIHGSPSRAILYLEGP | |||
| CBM22 | 197 | 346 | 4.4e-38 |
| NIVENSEVIDGRTTQPWFTLGDCKLSVGQGAPRTLPPMARDTLGPHKPLSGNYILVTNRTQTWMGPAQTITDKIKLFLTYQVSAWVKIGVGVSGSSSMSP QNVNIALSVDNQWVNGGQIEVTVGDSWHEIGGSFRLEKQPENVMVYVQGP | |||
| GH10 | 404 | 688 | 0 |
| KQTYNSFPVGTCISRSDIDNEDLVDFFTKNFNWAVFGNELKWFWTESERGKLNYQDADDMLDLCIGNNINVRGHCIFWEVEFRVQPWVRQLNKTDLMNAV QKRLTDLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKGARALMFNIAHKLDPSALLFVNDYHVADGDDTRSSPEKYIKQVLDLEAQGAPIGGIGLQGHMVS PVGSIVCSALDKLSALGHPIWFTEIDVSSSNEYVRGEDLEVMLWEAFAHPAVEGIMLWGFWELSMSRQDANLVEGEGEVNEAGKR | |||
| Full Sequence |
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| Protein Sequence Length: 753 Download |
| MEKNTKMSNA SDDDEAKHHT NEDQEKIILN PNFEDGLNNW TGRACKIVLH ESMDGGRITP 60 LSGKVFASAT QRKDTWNGIQ QEITGRFQRK RVYEVTASVR IFGNNVTSAT VQATLWVLNA 120 NQREQYIGIT NVQATDKNWV ELKGKFIIHG SPSRAILYLE GPPPGTDILL NSLVVKHARR 180 NRPSPPPFYE NPGYGVNIVE NSEVIDGRTT QPWFTLGDCK LSVGQGAPRT LPPMARDTLG 240 PHKPLSGNYI LVTNRTQTWM GPAQTITDKI KLFLTYQVSA WVKIGVGVSG SSSMSPQNVN 300 IALSVDNQWV NGGQIEVTVG DSWHEIGGSF RLEKQPENVM VYVQGPGAGI DLMIAGMRIF 360 PVDRRERVRC LKRQVDQVRK RDIVLKFSGL DDSFDLFPYI VKVKQTYNSF PVGTCISRSD 420 IDNEDLVDFF TKNFNWAVFG NELKWFWTES ERGKLNYQDA DDMLDLCIGN NINVRGHCIF 480 WEVEFRVQPW VRQLNKTDLM NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG 540 ARALMFNIAH KLDPSALLFV NDYHVADGDD TRSSPEKYIK QVLDLEAQGA PIGGIGLQGH 600 MVSPVGSIVC SALDKLSALG HPIWFTEIDV SSSNEYVRGE DLEVMLWEAF AHPAVEGIML 660 WGFWELSMSR QDANLVEGEG EVNEAGKRFL DVKQEWLSHA YGIINDESEF TFRGYQGTYA 720 VEICTPAGIV LKTFVVEKGD SPLVISIDLS SL* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-14 | 196 | 346 | 158 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 5.0e-17 | 27 | 166 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 7.0e-28 | 418 | 663 | 270 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 4.0e-74 | 443 | 689 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-83 | 402 | 693 | 313 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42019.1 | 0 | 1 | 752 | 1 | 752 | putative xylan endohydrolase [Arabidopsis thaliana] |
| RefSeq | NP_001031593.1 | 0 | 1 | 657 | 1 | 657 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 15 | 752 | 188 | 917 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 3e-26 | 23 | 359 | 26 | 347 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_192556.2 | 0 | 1 | 752 | 1 | 752 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 1e-25 | 433 | 662 | 39 | 268 | A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In Complex With Ubiquitin Molecule. |
| PDB | 1i1w_A | 1e-25 | 433 | 662 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 8e-25 | 433 | 662 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 1e-24 | 441 | 637 | 47 | 249 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1gor_A | 1e-24 | 441 | 637 | 47 | 249 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 329 | 330 | 658 | 0 |
| EB442796 | 305 | 226 | 530 | 0 |
| EL428755 | 280 | 410 | 689 | 0 |
| EX570690 | 294 | 456 | 749 | 0 |
| EB442796 | 120 | 56 | 175 | 0.0001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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