Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10000355m |
Family | GT5 |
Protein Properties | Length: 698 Molecular Weight: 76852 Isoelectric Point: 6.2482 |
Chromosome | Chromosome/Scaffold: 6 Start: 8299513 End: 8304166 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 188 | 687 | 0 |
NIVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTAGDKNYARAKDLGVRITVNCFGGSQEVSFYHEYRDGVDWVFVDHKSYHRPGNP YGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYG AVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINIDEWNPSTDEHIPFHYSADDISEKVQC KMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKFESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRF EPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYADGGAGAGTGWVFTPLSKDSMVSALRLAAATYREYRESWEGLMRRGMTQNYSWENAAVQYEQVFQ |
Full Sequence |
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Protein Sequence Length: 698 Download |
MITTWQNVRL QFRQEACVIF FFLLIWKHVG EVRRILYVVD RPQISGSAVR FEPLVGLNRT 60 GYSRPIGSLG FPRFRRRFSI GRPLLLRRSS STFSGGGGGS GESDGDDKGF IADAERDGSG 120 SVLGFQLSPP GDQKIFGTST DETTHQGEKK EAIDETVMAD FGVPGNRAVE EGATEVGVPS 180 GKAEVVNNIV FVTSEAAPYS KTGGLGDVCG SLPIALAGRG HRVMVISPRY LNGTAGDKNY 240 ARAKDLGVRI TVNCFGGSQE VSFYHEYRDG VDWVFVDHKS YHRPGNPYGD SKGAFGDNQF 300 RFTLLCHAAC EAPLVLPLGG FTYGEKSLFL VNDWHAGLVP ILLAAKYRPY GVYKDARSIL 360 IIHNLAHQGV EPAATYTNLG LPSEWYGAVG WVFPTWARTH ALDTGEAVNV LKGAIVTSDR 420 IITVSQGYAW EITTVEGGYG LQDLLSSRKS VINGITNGIN IDEWNPSTDE HIPFHYSADD 480 ISEKVQCKMA LQKELGLPIR PECPMIGFIG RLDYQKGIDL IQTAGPDLMV DDIQFVMLGS 540 GDPKFESWMR SMEETYRDKF RGWVGFNVPI SHRITAGCDI LLMPSRFEPC GLNQLYAMRY 600 GTIPVVHGTG GLRDTVENFN PYADGGAGAG TGWVFTPLSK DSMVSALRLA AATYREYRES 660 WEGLMRRGMT QNYSWENAAV QYEQVFQWVF MDPPYVS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 2.0e-106 | 192 | 687 | 506 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 4.0e-143 | 188 | 689 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 1.0e-172 | 188 | 687 | 514 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 188 | 688 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 188 | 687 | 501 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF24126.1 | 0 | 131 | 697 | 9 | 575 | AF121673_1 soluble starch synthase [Arabidopsis thaliana] |
GenBank | ABV25893.1 | 0 | 65 | 697 | 27 | 633 | starch synthase isoform I [Manihot esculenta] |
RefSeq | NP_197818.1 | 0 | 43 | 697 | 5 | 652 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002277372.1 | 0 | 64 | 697 | 21 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321996.1 | 0 | 58 | 697 | 24 | 649 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 188 | 686 | 11 | 508 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3vue_A | 0 | 188 | 686 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 188 | 686 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 188 | 686 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 188 | 686 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO595058 | 492 | 204 | 695 | 0 |
HO581986 | 368 | 297 | 663 | 0 |
GO872237 | 347 | 348 | 694 | 0 |
GO842198 | 336 | 211 | 546 | 0 |
HO581986 | 34 | 662 | 695 | 0.000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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