Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10000396m |
Family | GH3 |
Protein Properties | Length: 670 Molecular Weight: 72691.2 Isoelectric Point: 7.0061 |
Chromosome | Chromosome/Scaffold: 6 Start: 1408150 End: 1412396 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 108 | 343 | 0 |
LVSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRDPDLVKRIGAATALEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHKVVEDMTDVILGLQ GEPPSNYKHGVPFVGGRDKVAACAKHYVGDGGTTRGINENNTVTDLHGLLSVHMPAYADAIYKGVSTVMVSYSSWNGEKMHANTELITGYLKGTLKFKGF VISDWQGVDKISSPPHTNYTASVRAAIQAGIDMVMV |
Full Sequence |
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Protein Sequence Length: 670 Download |
MSRVSGRIIV GSLLWMCVWV CCNGDGEYVL YKDPKQTVSD RVADLFGRMT LEEKIGQMVQ 60 IDRSVATVNI MRDYFIGSVL SGGGSAPLPE ATAQNWVDMI NEYQKGALVS RLGIPMIYGI 120 DAVHGHNNVY NATIFPHNVG LGATRDPDLV KRIGAATALE VRATGIPYTF APCIAVCRDP 180 RWGRCYESYS EDHKVVEDMT DVILGLQGEP PSNYKHGVPF VGGRDKVAAC AKHYVGDGGT 240 TRGINENNTV TDLHGLLSVH MPAYADAIYK GVSTVMVSYS SWNGEKMHAN TELITGYLKG 300 TLKFKGFVIS DWQGVDKISS PPHTNYTASV RAAIQAGIDM VMVPFNFTEF VNDLMSLVKT 360 KVIPVTRIDD AVTRILLVKF TMGLFENPLA DYSFSNELGS QAHRDLAREA VRKSLVLLKN 420 GNKTNPMLPL PRKTSKILVA GTHADNLGYQ CGGWTINWQG FTGNKNTRGT TLLGAVKSAV 480 DRSTEVIFRE NPDVEFIKSN NFAYAIIAVG EPPYAETAGD SDKLTMLDPG PAIISSTCQA 540 VKCVVVVISG RPLVMEPYVA SIEALVAAWL PGTEGQGITD ALFGDHGFSG KLPVTWFRNT 600 EQLPMSYGDS HYDPLFAYGS GLETESVASI VARSTSASAT STKPCLITVL VSATISLFFF 660 PSLSRVLRR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 1.0e-37 | 107 | 618 | 568 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-43 | 415 | 622 | 226 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 3.0e-78 | 42 | 622 | 649 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 1.0e-84 | 50 | 376 | 331 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 3.0e-87 | 49 | 457 | 418 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC42711.1 | 0 | 99 | 666 | 1 | 568 | unknown protein [Arabidopsis thaliana] |
EMBL | CBI24995.1 | 0 | 49 | 659 | 1 | 614 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_680141.2 | 0 | 1 | 666 | 1 | 665 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002262992.1 | 0 | 27 | 659 | 24 | 653 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002514453.1 | 0 | 7 | 651 | 3 | 646 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 27 | 626 | 1 | 601 | A Chain A, The Structure Of Soybean Peroxidase |
PDB | 1x38_A | 0 | 27 | 626 | 1 | 601 | A Chain A, The Structure Of Soybean Peroxidase |
PDB | 1lq2_A | 0 | 27 | 626 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 27 | 626 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 27 | 626 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |