| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000524m |
| Family | AA7 |
| Protein Properties | Length: 598 Molecular Weight: 65906.9 Isoelectric Point: 6.8593 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2001237 End: 2006682 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA7 | 174 | 369 | 4.8e-26 |
| NIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEEYGLFFPLDPGPGAS IGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPQHSVVAVCNFPTVKDAADV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 598 Download |
| LTFDFLFIFL YFLSSSFPIS PSGREIHPQS MAFTSRFARS KTVFSFLRKS RQLHSTPKLT 60 GDVTVVFPEK GRRRLPTWWS SSLLPLAIAA SASSYAFMNQ SHPSISESSS ALDPRDVTIG 120 GKDSTEPVVK GEYKEVPKEL ITQLKTILQD NLTTDYDERY FHGKPQNSFH KAVNIPDVVV 180 FPRSEEEVSK ILKSCNEYKV PIVPYGGATS IEGHTLAPKG GVCIDMSLMK SVKALHVEDM 240 DVVVEPGIGW LELNEYLEEY GLFFPLDPGP GASIGGMCAT RCSGSLAVRY GTMRDNVISL 300 KVVLPNGDVV KTASRARKSA AGYDLTRLMI GSEGTLGVIT EVTLRLQKIP QHSVVAVCNF 360 PTVKDAADVA IATMMSGIQV SRVELLDEVQ IRAINMANGK NLNEAPTLMF EFIGTEAYTR 420 EQTQIVQQIA SKHNGSDFMF AEEPEAKKEL WKIRKEALWS CYAMAPGHEA MITDVCVPLS 480 HLAELISKSK KEIEASSLLC TVIAHAGDGN FHACIMFDPS KEEQRREAER LNHFMVHSAL 540 SMDGTCTGEH GVGTGKMKYL EKELGIEALQ TMKKIKKTLD PNDIMNPGKL IPPHVCF* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 6.0e-45 | 175 | 596 | 427 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 6.0e-67 | 349 | 590 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 2.0e-86 | 179 | 589 | 415 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 3.0e-109 | 143 | 593 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 39 | 597 | 559 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11407.1 | 0 | 183 | 597 | 3 | 418 | glycolate oxidase subunit D-like; D-lactate dehydrogenase-like [Arabidopsis thaliana] |
| RefSeq | NP_568170.1 | 0 | 31 | 597 | 1 | 567 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267321.1 | 0 | 31 | 597 | 1 | 566 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322755.1 | 0 | 119 | 597 | 1 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524111.1 | 0 | 83 | 597 | 43 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 4.99983e-42 | 178 | 591 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 4.99983e-42 | 178 | 591 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 4.99983e-42 | 178 | 591 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 4.99983e-42 | 178 | 591 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 4.99983e-42 | 178 | 591 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
