| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000685m |
| Family | GH14 |
| Protein Properties | Length: 533 Molecular Weight: 57880.1 Isoelectric Point: 5.8898 |
| Chromosome | Chromosome/Scaffold: 6 Start: 6269044 End: 6274025 |
| Description | beta-amylase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 90 | 492 | 0 |
| FVGLPLDTVSGCNNVNHLKAITAGLKALKLLGVEGIELPIFWGVVEKEASGKYDWSGYLAVAEIVKKVGLKLHASLSFHGSKQTDIGLPDWVAEIGEAVP GVYFTDRYGQQYKDCLSFAVDDVPVLDGKTPMEVYRGFCESFKTVFSDYMGNTITGITLGLGPDGELRYPSHQHDAKRSGAGEFQCYDKHMLSALKSYAE SSGNPLWGLGGPHDAPAYDQQPHSSAFFSDGGSWETQYGEFFLSWYSSLLTSHADRVLSVASSAFSGIGVPLCGKLPLLHQWNKLRSQPSELTAGFYSPN GQDRYEAITEIFAKNSCRMIIPGMDLSDEHQSPLSSPESLLAHLKTSCKKQGVVVSGQNSSAPAPGGFERIVENLKDENAGIDLFTYQRMGALFFSPEHF HDF | |||
| Full Sequence |
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| Protein Sequence Length: 533 Download |
| MEVSVIGNSQ TRIFRGAELA YKELGFRFGS VVISGESRNK VTFLSQSSRL KDFSIRCSPR 60 SVKCEAIVSD GVPFLNSTPK SRSLDSVKLF VGLPLDTVSG CNNVNHLKAI TAGLKALKLL 120 GVEGIELPIF WGVVEKEASG KYDWSGYLAV AEIVKKVGLK LHASLSFHGS KQTDIGLPDW 180 VAEIGEAVPG VYFTDRYGQQ YKDCLSFAVD DVPVLDGKTP MEVYRGFCES FKTVFSDYMG 240 NTITGITLGL GPDGELRYPS HQHDAKRSGA GEFQCYDKHM LSALKSYAES SGNPLWGLGG 300 PHDAPAYDQQ PHSSAFFSDG GSWETQYGEF FLSWYSSLLT SHADRVLSVA SSAFSGIGVP 360 LCGKLPLLHQ WNKLRSQPSE LTAGFYSPNG QDRYEAITEI FAKNSCRMII PGMDLSDEHQ 420 SPLSSPESLL AHLKTSCKKQ GVVVSGQNSS APAPGGFERI VENLKDENAG IDLFTYQRMG 480 ALFFSPEHFH DFTVFVRNLS QFELSSDDQA AEVETNTVNI GSGTGAPSLQ AA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 2.0e-82 | 87 | 499 | 431 | + beta-amylase | ||
| PLN02801 | PLN02801 | 3.0e-83 | 87 | 499 | 432 | + beta-amylase | ||
| PLN02161 | PLN02161 | 2.0e-88 | 75 | 500 | 456 | + beta-amylase | ||
| PLN00197 | PLN00197 | 8.0e-93 | 61 | 514 | 484 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 2.0e-107 | 77 | 501 | 437 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK85300.1 | 0 | 1 | 532 | 1 | 537 | AF402598_1 putative beta-amylase BMY3 [Arabidopsis thaliana] |
| EMBL | CAI39245.1 | 0 | 1 | 532 | 1 | 536 | beta-amylase [Glycine max] |
| EMBL | CAN66037.1 | 0 | 1 | 514 | 1 | 520 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_197368.1 | 0 | 1 | 532 | 1 | 536 | BMY3; beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002276777.1 | 0 | 1 | 514 | 1 | 520 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1b1y_A | 0 | 87 | 499 | 6 | 435 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 1v3i_A | 0 | 84 | 499 | 9 | 441 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6g_A | 0 | 84 | 499 | 9 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1q6d_A | 0 | 84 | 499 | 9 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1wds_A | 0 | 84 | 499 | 9 | 441 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX130723 | 289 | 191 | 477 | 0 |
| FY443880 | 293 | 55 | 346 | 0 |
| FY431251 | 275 | 261 | 533 | 0 |
| FY448068 | 268 | 81 | 347 | 0 |
| HO781436 | 404 | 135 | 533 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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