| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000723m |
| Family | PL1 |
| Protein Properties | Length: 521 Molecular Weight: 56148.8 Isoelectric Point: 6.9118 |
| Chromosome | Chromosome/Scaffold: 6 Start: 1189861 End: 1194487 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 158 | 364 | 0 |
| VIQTEPLWIIFSGDMGINLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWI DHCSLGYCSDGLIDVILASTAVTISNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPTINS QGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 521 Download |
| MLAHEERIHN LQKPTYICII WFCLLLSLSQ HGRASSSPSP SSIFNLSLPH QHPFPEHVVL 60 NVQRKLNNSL SRRQLLTYQQ DDGTTASSPI PSCITGNPID DCWRCDPNWS ANRQQLADCS 120 IGFGQGTLGG KGGRFYLVTD SSDNDAANPL PGTLRHAVIQ TEPLWIIFSG DMGINLKHEL 180 IIGSYKTIDG RGTNIQITGH GCLTIQQVSH VIIHNVHIHH CKPSGNTLVA SSPTHVGFRG 240 VSDGDGISVS ASHHIWIDHC SLGYCSDGLI DVILASTAVT ISNNYFSHHD EVMLLGHDDR 300 YTADKGMQVT IAFNHFGEGL VQRMPRCRHG YIHVVNNDFT AWEMYAIGGS ASPTINSQGN 360 RYTAPVDPNA KEVTKRVDSN EKHWSGWNWR TEGDVMVNGA FFVPSGDGVS PAYAKATSVQ 420 PKAAAVIDQL TVNAGVFGDP SGRNGQGGSF PGITDGGGTI TRGYSKSGPG GGGGGGSDSD 480 DGIFSVIFGN NSGAVAPRPG QVWSILFIII LYWFIPYHTR * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-23 | 177 | 360 | 200 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-58 | 177 | 362 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-64 | 171 | 365 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24172.1 | 0 | 172 | 520 | 1 | 348 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_196051.2 | 0 | 1 | 520 | 1 | 517 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 44 | 497 | 26 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 17 | 440 | 6 | 414 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 17 | 497 | 7 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 97 | 436 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 97 | 436 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-21 | 116 | 362 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-17 | 180 | 382 | 128 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 2e-16 | 122 | 435 | 22 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
