| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000767m |
| Family | CBM43 |
| Protein Properties | Length: 507 Molecular Weight: 54773.2 Isoelectric Point: 8.5136 |
| Chromosome | Chromosome/Scaffold: 6 Start: 7100025 End: 7101947 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 376 | 458 | 2.5e-23 |
| WCVLSSQAAGNAGAALATSASYACENADCTSLGPGSSCAALDPAANASYAFNMYFQKMDHRRGSCNFNNLGALTKIDPSSGSC | |||
| GH17 | 31 | 356 | 0 |
| ACNWGTQASHPLPPDIVVKLLRENGFNKVKLFEADPGALRALGKSGIQVMVGIPNDLLATMASTVTNAELWVQQNVSQYISLYGTDIRYVAVGNEPFLKT YKDRFVRSTYPALQNVQAALVKAGLGRQVKVTVPLNADVYESGDGLPSSGDFRSDIKTLMVSIVRFLADSVSPITFNIYPFLSLNADPNFPREYAFFPNG SGGGGGAKPVVDGSISYTNVFDANFDTLVSALEKNGFDANKIEIIVGEVGWPTDGDQNANPALAQRFNQGLLNRILQGQGTPRRRTAPEIYIFSLVDEDA KSIDPGKFERHWGIFSYDGAVKYPLS | |||
| Full Sequence |
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| Protein Sequence Length: 507 Download |
| MGRHDTYQKF ILLCLSLLLH HNIVKNVEGL ACNWGTQASH PLPPDIVVKL LRENGFNKVK 60 LFEADPGALR ALGKSGIQVM VGIPNDLLAT MASTVTNAEL WVQQNVSQYI SLYGTDIRYV 120 AVGNEPFLKT YKDRFVRSTY PALQNVQAAL VKAGLGRQVK VTVPLNADVY ESGDGLPSSG 180 DFRSDIKTLM VSIVRFLADS VSPITFNIYP FLSLNADPNF PREYAFFPNG SGGGGGAKPV 240 VDGSISYTNV FDANFDTLVS ALEKNGFDAN KIEIIVGEVG WPTDGDQNAN PALAQRFNQG 300 LLNRILQGQG TPRRRTAPEI YIFSLVDEDA KSIDPGKFER HWGIFSYDGA VKYPLSLANG 360 RQLVPAKGVR YLAREWCVLS SQAAGNAGAA LATSASYACE NADCTSLGPG SSCAALDPAA 420 NASYAFNMYF QKMDHRRGSC NFNNLGALTK IDPSSGSCRF PIQIDTSRRE TSKPRPPRSS 480 SGATLAKWTT VTAVAAAMVI GWTIFN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 9.0e-7 | 271 | 348 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-8 | 400 | 446 | 53 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-21 | 400 | 460 | 62 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-68 | 30 | 356 | 329 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI27737.1 | 0 | 29 | 483 | 24 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197587.1 | 0 | 1 | 500 | 1 | 497 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277217.1 | 0 | 31 | 483 | 18 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309443.1 | 0 | 29 | 462 | 1 | 425 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516181.1 | 0 | 4 | 491 | 18 | 498 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 34 | 357 | 5 | 306 | A Chain A, Crystal Structure Of A Response Regulator From Myxococcus Xanthus |
| PDB | 1aq0_B | 0 | 34 | 357 | 5 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 34 | 357 | 5 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 1.99993e-41 | 34 | 358 | 6 | 316 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 1.99993e-41 | 34 | 358 | 6 | 316 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
