| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10000922m |
| Family | CBM43 |
| Protein Properties | Length: 460 Molecular Weight: 50900.1 Isoelectric Point: 7.1324 |
| Chromosome | Chromosome/Scaffold: 6 Start: 8317220 End: 8318778 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 374 | 456 | 1.6e-28 |
| WCVTKPGAETVALQRNIDYVCGLGLDCRPINEGGLCYLPNTVKAHSEYAMNLFYQTMGKYKFDCDFDKTGEITTINPSYGDCE | |||
| GH17 | 10 | 324 | 0 |
| IGVNYGTLANNLPPPQQVAEFLLRSTLINRIRLFDADPLILKAFANTGITVTVTVPNDQIPHLTNLTSAQKWISDHIQPHFPSTNIIRILVGNEVISTAD HLLIRTLVPAMQSLHTALVSASLHRRIQISTPHSLGILSDSTPPSSAKFRRGYNTQVLKPLLSFLRTTSSPFVVNPYPFFGYSPETLDFALFRPNPGLFD HHTKLLYTNMLDAQLDSVYSAMDKLGFSDVEIVIGEIGWPSEGDIDQIGVDVSTAAEFNKHLVARVDSGTGTPLMPNRSFETYIFALFDENLKSGPTSER NFGIFRSDLTPIYDI | |||
| Full Sequence |
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| Protein Sequence Length: 460 Download |
| MRSGGADGSI GVNYGTLANN LPPPQQVAEF LLRSTLINRI RLFDADPLIL KAFANTGITV 60 TVTVPNDQIP HLTNLTSAQK WISDHIQPHF PSTNIIRILV GNEVISTADH LLIRTLVPAM 120 QSLHTALVSA SLHRRIQIST PHSLGILSDS TPPSSAKFRR GYNTQVLKPL LSFLRTTSSP 180 FVVNPYPFFG YSPETLDFAL FRPNPGLFDH HTKLLYTNML DAQLDSVYSA MDKLGFSDVE 240 IVIGEIGWPS EGDIDQIGVD VSTAAEFNKH LVARVDSGTG TPLMPNRSFE TYIFALFDEN 300 LKSGPTSERN FGIFRSDLTP IYDIGILRPK VINRRRIFAV FANFFIPLRI VQVRSSIPEK 360 NPGSPAQGSP EKRWCVTKPG AETVALQRNI DYVCGLGLDC RPINEGGLCY LPNTVKAHSE 420 YAMNLFYQTM GKYKFDCDFD KTGEITTINP SYGDCEYHA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 3.0e-17 | 373 | 443 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-36 | 374 | 457 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-91 | 10 | 324 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23036.1 | 0 | 4 | 457 | 18 | 458 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001031936.1 | 0 | 5 | 459 | 25 | 457 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_001119271.1 | 0 | 5 | 451 | 25 | 449 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002318439.1 | 0 | 5 | 457 | 27 | 463 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526252.1 | 0 | 5 | 451 | 26 | 466 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 10 | 324 | 3 | 312 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 3ur8_A | 0 | 10 | 324 | 3 | 312 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 3ur7_B | 0 | 10 | 324 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 10 | 324 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 10 | 324 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG484762 | 298 | 5 | 302 | 0 |
| EG486112 | 294 | 36 | 329 | 0 |
| EG484766 | 323 | 80 | 402 | 0 |
| EG486110 | 291 | 36 | 326 | 0 |
| EG486112 | 32 | 358 | 389 | 0.0002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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