Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10001159m |
Family | CE8 |
Protein Properties | Length: 387 Molecular Weight: 42929.4 Isoelectric Point: 9.554 |
Chromosome | Chromosome/Scaffold: 6 Start: 6697596 End: 6700350 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 91 | 380 | 0 |
HKKSNKGDFTKIQDAIDSLPLINLVRVVIKVHAGVYKEKVNIPPMKAFITIQGEGAENTIVEWGDTAQTPDSKGNPMGTFNSASFAVNSPFFVAKNITFK NTTPVPLPGAVGKQAVALRVSADNAAFFGCKMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFV KCKVTGTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYAGRVAWARELTDEEAKPFISLNFIDG |
Full Sequence |
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Protein Sequence Length: 387 Download |
MLKFNSTKAP NLFLLFLFLL VILLCSTQTQ CHTKGLRLRP RNQKNVNATS DRTQNPEDEF 60 MKWVRFVGSL KHSVFKTAKN KLFPSYTLTV HKKSNKGDFT KIQDAIDSLP LINLVRVVIK 120 VHAGVYKEKV NIPPMKAFIT IQGEGAENTI VEWGDTAQTP DSKGNPMGTF NSASFAVNSP 180 FFVAKNITFK NTTPVPLPGA VGKQAVALRV SADNAAFFGC KMLGAQDTLY DHLGRHYYKD 240 CYIEGSVDFI FGNALSLYEG CHVHAIADKL GAVTAQGRSS VLEDTGFSFV KCKVTGTGVL 300 YLGRAWGPFS RVVFAYTYMD NIILPRGWYN WGDPSREMTV FYGQYKCTGA GANYAGRVAW 360 ARELTDEEAK PFISLNFIDG SEWIKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-116 | 47 | 384 | 339 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-119 | 98 | 385 | 296 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-121 | 92 | 384 | 295 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-121 | 93 | 385 | 293 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 0 | 25 | 386 | 362 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 19 | 386 | 12 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 74 | 386 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 1 | 386 | 1 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 17 | 386 | 11 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 17 | 386 | 11 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 97 | 385 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5.04467e-44 | 90 | 385 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 9e-23 | 86 | 372 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 1e-19 | 85 | 372 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 1e-19 | 85 | 372 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |