| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10001248m |
| Family | GT47 |
| Protein Properties | Length: 361 Molecular Weight: 41167.4 Isoelectric Point: 9.5691 |
| Chromosome | Chromosome/Scaffold: 6 Start: 7710831 End: 7713271 |
| Description | FRA8 homolog |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 4 | 303 | 0 |
| GMKIYVYDLPASYNEDWVKASERCATHLFAAEVAIHRALLSSVVRTLDPEEADFFFVPVYVSCNFSTSNGFPSLSHARSLLSSAVDFLSVRHPFWNRTQG SDHVFVASHDFGACFHAMEDMAIEEGIPEFMKKSIILQTFGVNYKHPCQEVEHVVIPPYIPPESVERAVERSPANGRRDIWAFFRGKMEVNPKNISGRFY SKGVRTAILKKYGGRRRFYLNRHRFAGYRSEIVRSVFCLCPLGWAPWSPRLVESAVLGCVPVVIADGIKLPFSETVRWPEISLTVAEKDVRNLRKILEHV | |||
| Full Sequence |
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| Protein Sequence Length: 361 Download |
| MFSGMKIYVY DLPASYNEDW VKASERCATH LFAAEVAIHR ALLSSVVRTL DPEEADFFFV 60 PVYVSCNFST SNGFPSLSHA RSLLSSAVDF LSVRHPFWNR TQGSDHVFVA SHDFGACFHA 120 MEDMAIEEGI PEFMKKSIIL QTFGVNYKHP CQEVEHVVIP PYIPPESVER AVERSPANGR 180 RDIWAFFRGK MEVNPKNISG RFYSKGVRTA ILKKYGGRRR FYLNRHRFAG YRSEIVRSVF 240 CLCPLGWAPW SPRLVESAVL GCVPVVIADG IKLPFSETVR WPEISLTVAE KDVRNLRKIL 300 EHVAATNLSA IQRNLHEPEI KRSLLYNVPM KEGDATWRIL EALRRKLGER SYRRSRVLSQ 360 * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-72 | 3 | 300 | 305 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33322.1 | 0 | 1 | 357 | 84 | 439 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
| GenBank | ABI64067.1 | 0 | 1 | 360 | 84 | 442 | glycosyltransferase GT47C [Populus tremula x Populus alba] |
| DDBJ | BAB10615.1 | 0 | 1 | 360 | 134 | 493 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_197685.2 | 0 | 1 | 360 | 105 | 464 | F8H (FRA8 HOMOLOG); catalytic [Arabidopsis thaliana] |
| RefSeq | XP_002314302.1 | 0 | 1 | 360 | 104 | 462 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO797103 | 359 | 2 | 360 | 0 |
| DY287013 | 325 | 38 | 361 | 0 |
| CK261693 | 314 | 30 | 343 | 0 |
| DY022576 | 242 | 118 | 359 | 0 |
| FC898195 | 280 | 40 | 318 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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