CAZyme Information

Basic Information
SpeciesCapsella rubella
Cazyme IDCarubv10001405m
FamilyGH18
Protein PropertiesLength: 332 Molecular Weight: 37430.9 Isoelectric Point: 8.3155
ChromosomeChromosome/Scaffold: 6 Start: 16190583 End: 16192790
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH181332998.1e-23
  EMLRKKKLREKAINLIVTECKEMEYDGIVLESWSRWAAYGVLHDPDMRKIALQFVKQLGDALHSTTSPRNNQQHMQFMYVVGPPRSEKLQMYDCGPDDLQ
  FLKDSVDGFSLMTYDFSNPQNPGPNAPVKWIDLTLKLLLGSSNNMDSTLARKVLLGINFYGNDFVIS
Full Sequence
Protein Sequence     Length: 332     Download
MARRRRSSAT ESLKRRKEGD ESLPQVEEPD SDRRLIAIFV IFFILIPAVS IVVYKVKFDH    60
RDLQTETSIR HKGIVKTNIS FQEILTVSAM VSQGSGLVLE GRHNVDKGWI QELRSRGNAL    120
IVPRVVLEAI PGEMLRKKKL REKAINLIVT ECKEMEYDGI VLESWSRWAA YGVLHDPDMR    180
KIALQFVKQL GDALHSTTSP RNNQQHMQFM YVVGPPRSEK LQMYDCGPDD LQFLKDSVDG    240
FSLMTYDFSN PQNPGPNAPV KWIDLTLKLL LGSSNNMDST LARKVLLGIN FYGNDFVISG    300
DRGCFGKYSE DSAEASSIFC GHTFDLHFGS K* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
COG3858COG38584.0e-7135318188+
pfam00704Glyco_hydro_186.0e-8133296173+
cd02874GH18_CFLE_spore_hydrolase3.0e-9134298172+
smart00636Glyco_184.0e-16134296174+
cd02876GH18_SI-CLP3.0e-8192303217+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAB61039.10129927354A_IG002N01.31 gene product [Arabidopsis thaliana]
GenBankAAB61039.10.0006298328427457A_IG002N01.31 gene product [Arabidopsis thaliana]
GenBankAAM91562.1012231268unknown protein [Arabidopsis thaliana]
EMBLCBI40499.1092299143350unnamed protein product [Vitis vinifera]
RefSeqNP_192013.1013061351glycosyl hydrolase family 18 protein [Arabidopsis thaliana]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A5e-22101301125311B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B5e-22101301125311B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
Transmembrane Domains
StartEnd
3554
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DY026767207932990
DY27458235913070
JZ025404217943070
EL360222206922970
EV11504529222470
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Brassica rapaBra000939
Carica papayaevm.model.supercontig_273.9
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Medicago truncatulaMedtr5g025480.1
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00054484mPavirv00033212m
Physcomitrella patensPp1s162_65V6.1
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Sorghum bicolorSb03g028160.1
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny