| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10001507m |
| Family | GH18 |
| Protein Properties | Length: 315 Molecular Weight: 34397.3 Isoelectric Point: 9.8292 |
| Chromosome | Chromosome/Scaffold: 6 Start: 8168097 End: 8169343 |
| Description | chitinase A |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 44 | 262 | 1.2e-25 |
| IAIYWGQNGNEGNLSATCATGRFAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTRFSSQVKDCQTRGIKVMLSLGGGIGNYSIGSKKDAKVVADYLWN NFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWNDLASSLSKFSKRGRKVYLTGAPQCPFPDRLMGSALDTKLFDYVWIQFYNNPPCSYAPNNTQKLFDSW NKWTTSITAKKIFLGLPAA | |||
| Full Sequence |
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| Protein Sequence Length: 315 Download |
| HKEDKNINSK KNMTNINLVK HVIYFLFLIS CFVTKPSDAS RGGIAIYWGQ NGNEGNLSAT 60 CATGRFAYVN VAFLVKFGNG QTPELNLAGH CNPAANTCTR FSSQVKDCQT RGIKVMLSLG 120 GGIGNYSIGS KKDAKVVADY LWNNFLGGKS SSRPLGDAVL DGIDFNIELG SPQHWNDLAS 180 SLSKFSKRGR KVYLTGAPQC PFPDRLMGSA LDTKLFDYVW IQFYNNPPCS YAPNNTQKLF 240 DSWNKWTTSI TAKKIFLGLP AAPEAAGSGF IPPDVLTSQI LPTLKKSRKY GGVMLWSKFW 300 DDKNGYSSSI LASV* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd06545 | GH18_3CO4_chitinase | 0.001 | 52 | 307 | 276 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
| COG3469 | COG3469 | 5.0e-9 | 69 | 302 | 270 | + Chitinase [Carbohydrate transport and metabolism] | ||
| cd02871 | GH18_chitinase_D-like | 3.0e-12 | 69 | 309 | 289 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
| pfam00704 | Glyco_hydro_18 | 3.0e-26 | 42 | 301 | 337 | + Glycosyl hydrolases family 18. | ||
| cd02877 | GH18_hevamine_XipI_class_III | 6.0e-130 | 42 | 310 | 278 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA21873.1 | 0 | 13 | 314 | 1 | 302 | acidic endochitinase [Arabidopsis thaliana] |
| DDBJ | BAA21876.1 | 0 | 13 | 314 | 1 | 302 | acidic endochitinase [Turritis glabra] |
| DDBJ | BAC11884.1 | 0 | 13 | 314 | 1 | 302 | acidic chitinase [Arabidopsis halleri subsp. gemmifera] |
| DDBJ | BAC11888.1 | 0 | 13 | 314 | 1 | 302 | acidic endochitinase [Arabidopsis halleri subsp. gemmifera] |
| DDBJ | BAC11891.1 | 0 | 13 | 314 | 1 | 302 | acidic endochitinase [Arabidopsis halleri subsp. gemmifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2hvm_A | 0 | 42 | 314 | 1 | 273 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1llo_A | 0 | 42 | 314 | 1 | 273 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1hvq_A | 0 | 42 | 314 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
| PDB | 1kr0_A | 0 | 42 | 314 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
| PDB | 1kr1_A | 0 | 42 | 314 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES900715 | 294 | 11 | 303 | 0 |
| ES909051 | 263 | 16 | 278 | 0 |
| DW497436 | 296 | 20 | 315 | 0 |
| CD809335 | 293 | 23 | 315 | 0 |
| DT507879 | 265 | 37 | 301 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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