Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10002406m |
Family | CE8 |
Protein Properties | Length: 477 Molecular Weight: 52573.3 Isoelectric Point: 7.4707 |
Chromosome | Chromosome/Scaffold: 6 Start: 16526532 End: 16528189 |
Description | pectin methylesterase 38 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 166 | 460 | 0 |
DVVVAQDGSGDYKSIQEAVNGAGARPKGSPRYVIHVKQGVYEEYVNVRSKFTNVMIIGDGIGKTIITGDKSKGRGISTFKSATFVATGDGFVGRDMTIRN TAGPENHQAVALRSDSDMSVFYRCSIEGYQDTLYVHTGRQFFRECDIYGTVDFIFGNAAAFFQNCRIYARSPPNGVNTITAQSRVNPNQTTGIVIHNSVV RGAPGTQLEGVKTYLGRPWRSYARTVVMGTFLDQLIEPKGWLEWDNVTALSTLYYGESQNTGPGSGTENRVDWPGFHVISSNEEARQFTLLQFID |
Full Sequence |
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Protein Sequence Length: 477 Download |
MVVGNEMFCD ETPHPGECKT LLIEHKPIKS TTQFLQVSVE QTLYGAVKAK SDTYSLGPQF 60 GSKQAWENCL DLYDQTIHRL NQSLLCPKNA CSRSDVQTWL STALTNLDTC QEEMSEAGVS 120 SRSMQSITSN VINALAINKR METHGNAFRR RKVEVETPSM IGGKVDVVVA QDGSGDYKSI 180 QEAVNGAGAR PKGSPRYVIH VKQGVYEEYV NVRSKFTNVM IIGDGIGKTI ITGDKSKGRG 240 ISTFKSATFV ATGDGFVGRD MTIRNTAGPE NHQAVALRSD SDMSVFYRCS IEGYQDTLYV 300 HTGRQFFREC DIYGTVDFIF GNAAAFFQNC RIYARSPPNG VNTITAQSRV NPNQTTGIVI 360 HNSVVRGAPG TQLEGVKTYL GRPWRSYART VVMGTFLDQL IEPKGWLEWD NVTALSTLYY 420 GESQNTGPGS GTENRVDWPG FHVISSNEEA RQFTLLQFID AALWLPPTKV PFTINL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 1.0e-130 | 9 | 472 | 497 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02995 | PLN02995 | 1.0e-130 | 8 | 476 | 500 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 3.0e-133 | 9 | 476 | 532 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 4.0e-139 | 63 | 473 | 434 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 8.0e-163 | 166 | 461 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78759.1 | 0 | 8 | 476 | 28 | 513 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_191930.1 | 0 | 1 | 476 | 1 | 474 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002280446.1 | 0 | 8 | 476 | 28 | 513 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320714.1 | 0 | 8 | 476 | 31 | 514 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511679.1 | 0 | 6 | 476 | 29 | 514 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 166 | 476 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 166 | 476 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-23 | 168 | 384 | 6 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-23 | 168 | 384 | 6 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-23 | 168 | 384 | 6 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GD253122 | 237 | 243 | 477 | 0 |
HS077103 | 288 | 163 | 446 | 0 |
FL483122 | 236 | 243 | 476 | 0 |
EL463457 | 240 | 242 | 477 | 0 |
JK514259 | 238 | 244 | 477 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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