Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10002725m |
Family | CBM43 |
Protein Properties | Length: 116 Molecular Weight: 12945.1 Isoelectric Point: 10.0981 |
Chromosome | Chromosome/Scaffold: 6 Start: 12624056 End: 12624403 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 31 | 112 | 3.3e-30 |
WCVAKLTAANVQLQENINLGCKRVDCRPIRHGGYCFNPNTLLNHASFVMNAYYQSRNRTQKACNFKNTGTFATTDPSFGSCK |
Full Sequence |
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Protein Sequence Length: 116 Download |
MVKISLPLTI LFVFLSLIMI NHLHAASPKT WCVAKLTAAN VQLQENINLG CKRVDCRPIR 60 HGGYCFNPNT LLNHASFVMN AYYQSRNRTQ KACNFKNTGT FATTDPSFGS CKYRS* 120 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam07983 | X8 | 2.0e-16 | 30 | 100 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. |
smart00768 | X8 | 3.0e-33 | 30 | 113 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28052.1 | 0 | 1 | 115 | 1 | 116 | unknown [Arabidopsis thaliana] |
RefSeq | NP_001078361.1 | 0 | 1 | 115 | 1 | 116 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001118955.1 | 0 | 1 | 115 | 1 | 116 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_001118956.1 | 0 | 1 | 115 | 1 | 116 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_192648.2 | 0 | 1 | 115 | 1 | 116 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-22 | 30 | 115 | 12 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |