y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10002833m |
Family | CBM43 |
Protein Properties | Length: 156 Molecular Weight: 17160.6 Isoelectric Point: 8.7869 |
Chromosome | Chromosome/Scaffold: 6 Start: 15065031 End: 15065838 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 35 | 118 | 1.3e-33 |
WCVARPGASQAELQRALDWACGIGRVDCSVIERHGDCYEPDTIVSHASFAFNAYYQTNGNNRIACYFGGTAALTKINPSYGKCS |
Full Sequence |
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Protein Sequence Length: 156 Download |
MTYVQYVAAR PVTTIRPESI IGPQGNTTFL EGTTWCVARP GASQAELQRA LDWACGIGRV 60 DCSVIERHGD CYEPDTIVSH ASFAFNAYYQ TNGNNRIACY FGGTAALTKI NPSYGKCSYD 120 VSRSEVSAAR SLSKYKHRWL MLMHIGLLLL ISRRG* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-20 | 34 | 105 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 34 | 119 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ85566.1 | 0 | 7 | 150 | 34 | 173 | unknown [Medicago truncatula] |
GenBank | ACU17215.1 | 0 | 8 | 138 | 32 | 158 | unknown [Glycine max] |
EMBL | CAB81085.1 | 0 | 14 | 124 | 2 | 112 | putative protein [Arabidopsis thaliana] |
EMBL | CBI30973.1 | 0 | 8 | 136 | 580 | 703 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_192452.2 | 0 | 14 | 154 | 2 | 142 | unknown protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-20 | 34 | 119 | 12 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CF652466 | 111 | 3 | 113 | 0 |
DT019806 | 129 | 8 | 136 | 0 |
DT039619 | 129 | 8 | 136 | 0 |
CF652466 | 34 | 123 | 156 | 2.9 |
CF652466 | 12 | 114 | 125 | 2.9 |
Sequence Alignments (This image is cropped. Click for full image.) |
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