Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10003078m |
Family | CE8 |
Protein Properties | Length: 301 Molecular Weight: 32708.7 Isoelectric Point: 6.4946 |
Chromosome | Chromosome/Scaffold: 6 Start: 9356994 End: 9358946 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 48 | 289 | 0 |
EGQRVTTITYNGNKATDVSTTFTSHPSYVVVRNLSIMNTYNRLDSLPTTTSNGMSWNIKPAVALNVYGDKSAFYDCDFLGLQDTLWDNQGKHHFKNCYIE GAVDFIFGQGQSIYEDCKINATAGALASKVALGYITAQGRQNPSDPSGFVFLRGSVSGSTSVYLGRAYGPFSRVIFIQTELSSVVHPLGWDSWHCDAHKW SLTYAEVECKGAGSDMSGRVPWIDKLSYSAAKQRFSISNFID |
Full Sequence |
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Protein Sequence Length: 301 Download |
MSCLFIFIAL VLSSCVFGSL TTSATALDQT CGNKVVNTIV VDQSGSSEGQ RVTTITYNGN 60 KATDVSTTFT SHPSYVVVRN LSIMNTYNRL DSLPTTTSNG MSWNIKPAVA LNVYGDKSAF 120 YDCDFLGLQD TLWDNQGKHH FKNCYIEGAV DFIFGQGQSI YEDCKINATA GALASKVALG 180 YITAQGRQNP SDPSGFVFLR GSVSGSTSVY LGRAYGPFSR VIFIQTELSS VVHPLGWDSW 240 HCDAHKWSLT YAEVECKGAG SDMSGRVPWI DKLSYSAAKQ RFSISNFIDQ DGWISNIPSF 300 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 5.0e-55 | 53 | 294 | 242 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-60 | 53 | 300 | 252 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 5.0e-61 | 66 | 296 | 231 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 6.0e-74 | 53 | 298 | 248 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-84 | 48 | 298 | 251 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB61046.1 | 0 | 1 | 300 | 1 | 244 | Similar to pectinesterase; F2P16.5 [Arabidopsis thaliana] |
RefSeq | NP_198033.2 | 0 | 1 | 300 | 1 | 293 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002318946.1 | 0 | 52 | 298 | 98 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 48 | 298 | 92 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 49 | 300 | 96 | 339 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6e-33 | 51 | 294 | 66 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-22 | 108 | 294 | 110 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000003 | 66 | 238 | 115 | 304 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.0000000003 | 66 | 238 | 88 | 280 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.0000000003 | 66 | 238 | 88 | 280 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |